Variant report

Variant	rs2654449
Chromosome Location	chr6:38719819-38719820
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10484855	1.00[ASN][1000 genomes]
rs11751782	1.00[ASN][1000 genomes]
rs12206711	1.00[ASN][1000 genomes]
rs12212784	1.00[ASN][1000 genomes]
rs13191302	1.00[ASN][1000 genomes]
rs13196530	1.00[ASN][1000 genomes]
rs13196708	1.00[ASN][1000 genomes]
rs13198900	1.00[ASN][1000 genomes]
rs13199033	1.00[ASN][1000 genomes]
rs13202862	1.00[ASN][1000 genomes]
rs13203443	1.00[ASN][1000 genomes]
rs13207160	1.00[ASN][1000 genomes]
rs13209846	1.00[ASN][1000 genomes]
rs13210334	1.00[ASN][1000 genomes]
rs13212218	1.00[ASN][1000 genomes]
rs13213257	1.00[ASN][1000 genomes]
rs13215896	1.00[ASN][1000 genomes]
rs13217234	1.00[ASN][1000 genomes]
rs13218305	1.00[ASN][1000 genomes]
rs13219252	1.00[ASN][1000 genomes]
rs13219781	1.00[ASN][1000 genomes]
rs1698998	1.00[ASN][1000 genomes]
rs17544311	1.00[ASN][1000 genomes]
rs17544868	1.00[ASN][1000 genomes]
rs1937782	1.00[ASN][1000 genomes]
rs28360530	1.00[ASN][1000 genomes]
rs34349982	1.00[ASN][1000 genomes]
rs34360712	1.00[ASN][1000 genomes]
rs34408317	1.00[ASN][1000 genomes]
rs34470929	1.00[ASN][1000 genomes]
rs34519749	1.00[ASN][1000 genomes]
rs34637217	1.00[ASN][1000 genomes]
rs34695044	1.00[ASN][1000 genomes]
rs34897279	1.00[ASN][1000 genomes]
rs34962226	1.00[ASN][1000 genomes]
rs34971977	1.00[ASN][1000 genomes]
rs35147121	1.00[ASN][1000 genomes]
rs35152718	1.00[ASN][1000 genomes]
rs35207097	1.00[ASN][1000 genomes]
rs35266471	1.00[ASN][1000 genomes]
rs35388596	1.00[ASN][1000 genomes]
rs35901431	1.00[ASN][1000 genomes]
rs35975219	1.00[ASN][1000 genomes]
rs67457665	1.00[ASN][1000 genomes]
rs71544423	1.00[ASN][1000 genomes]
rs71571331	1.00[ASN][1000 genomes]
rs71571332	1.00[ASN][1000 genomes]
rs71571336	1.00[ASN][1000 genomes]
rs72856580	1.00[ASN][1000 genomes]
rs73416349	1.00[ASN][1000 genomes]
rs73416350	1.00[ASN][1000 genomes]
rs73416351	1.00[ASN][1000 genomes]
rs7451595	1.00[ASN][1000 genomes]
rs7604	1.00[ASN][1000 genomes]
rs7746400	1.00[ASN][1000 genomes]
rs7750789	1.00[ASN][1000 genomes]
rs7762397	1.00[ASN][1000 genomes]
rs963720	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv830642	chr6:38645056-38800657	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv3504257	chr6:38719772-38720202	Weak transcription	n/a	n/a	inside rSNPs	diseases
5	esv3504258	chr6:38719784-38720235	Weak transcription	n/a	n/a	inside rSNPs	diseases
6	esv3504259	chr6:38719804-38720166	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38706200-38738600	Weak transcription	K562	blood
2	chr6:38719400-38722400	Weak transcription	HMEC	breast
3	chr6:38719400-38722600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:38719800-38722800	Weak transcription	Fetal Kidney	kidney

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