The 2.0 version of rSNPBase

Variant report

Variant rs13196708
Chromosome Location chr6:38566954-38566955
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:57 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:38523000-38571600 Weak transcription HSMMtube muscle
2 chr6:38535800-38578200 Weak transcription Colon Smooth Muscle Colon
3 chr6:38540400-38567800 Weak transcription Primary T killer naive cells fromperipheralblood blood
4 chr6:38540400-38569200 Weak transcription Primary hematopoietic stem cells blood
5 chr6:38541400-38568600 Weak transcription Spleen Spleen
6 chr6:38541600-38567000 Weak transcription Small Intestine intestine
7 chr6:38548200-38570800 Weak transcription Fetal Kidney kidney
8 chr6:38549000-38570800 Weak transcription Fetal Intestine Small intestine
9 chr6:38556000-38580400 Weak transcription Ovary ovary
10 chr6:38556200-38567400 Weak transcription Lung lung
11 chr6:38557400-38571800 Weak transcription Muscle Satellite Cultured Cells --
12 chr6:38557400-38571800 Weak transcription NHDF-Ad bronchial
13 chr6:38557400-38578000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
14 chr6:38557800-38571600 Weak transcription HMEC breast
15 chr6:38557800-38572000 Weak transcription NHLF lung
16 chr6:38558800-38567400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
17 chr6:38559600-38567400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
18 chr6:38560600-38567400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
19 chr6:38560600-38568200 Weak transcription Stomach Smooth Muscle stomach
20 chr6:38560600-38570800 Weak transcription Fetal Intestine Large intestine
21 chr6:38560600-38570800 Weak transcription Left Ventricle heart
22 chr6:38560600-38570800 Weak transcription Skeletal Muscle Male skeletal muscle
23 chr6:38560600-38571000 Weak transcription Primary T helper naive cells from peripheral blood blood
24 chr6:38560600-38571800 Weak transcription HSMM muscle
25 chr6:38560600-38574400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
26 chr6:38560800-38570800 Weak transcription Rectal Mucosa Donor 31 rectum
27 chr6:38560800-38571400 Weak transcription Rectal Mucosa Donor 29 rectum
28 chr6:38560800-38580000 Weak transcription Skeletal Muscle Female skeletal muscle
29 chr6:38560800-38580200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
30 chr6:38561400-38577600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
31 chr6:38561400-38578000 Weak transcription Brain Cingulate Gyrus brain
32 chr6:38561600-38571400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
33 chr6:38561800-38571600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
34 chr6:38561800-38571600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
35 chr6:38562000-38567600 Weak transcription Brain Anterior Caudate brain
36 chr6:38562000-38570600 Weak transcription Fetal Lung lung
37 chr6:38562000-38570800 Weak transcription Brain Hippocampus Middle brain
38 chr6:38562000-38571800 Weak transcription Rectal Smooth Muscle rectum
39 chr6:38562000-38574600 Weak transcription Fetal Muscle Leg muscle
40 chr6:38562000-38578000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
41 chr6:38562200-38567600 Weak transcription Psoas Muscle Psoas
42 chr6:38562200-38570600 Weak transcription Sigmoid Colon Sigmoid Colon
43 chr6:38562200-38571200 Weak transcription Liver Liver
44 chr6:38562200-38571600 Weak transcription Breast Myoepithelial Primary Cells Breast
45 chr6:38562200-38575000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
46 chr6:38562200-38580000 Weak transcription Aorta Aorta
47 chr6:38562600-38570600 Weak transcription Duodenum Mucosa Duodenum
48 chr6:38562800-38579800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
49 chr6:38564000-38567600 Weak transcription Gastric stomach
50 chr6:38564000-38580400 Weak transcription Primary T helper cells fromperipheralblood blood

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Last update: Aug 31, 2015