Variant report

Variant	rs11751782
Chromosome Location	chr6:38607165-38607166
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:38565254..38567561-chr6:38606168..38608897,2	MCF-7	breast:
2	chr6:38605277..38607230-chr6:38608690..38610298,2	K562	blood:
3	chr6:38606797..38609056-chr6:38670128..38671908,2	K562	blood:
4	chr1:210546884..210547655-chr6:38607075..38607575,2	Hela-S3	cervix:
5	chr3:185630390..185631354-chr6:38606988..38607593,2	NB4	blood:

Variant related genes	Relation type
ENSG00000183826	Chromatin interaction
ENSG00000124767	Chromatin interaction
ENSG00000200972	Chromatin interaction

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10484855	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1130534	0.80[EUR][1000 genomes]
rs12206711	1.00[ASN][1000 genomes]
rs12212784	1.00[ASN][1000 genomes]
rs13191302	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13194237	0.85[EUR][1000 genomes]
rs13196530	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13196708	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13198900	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13199033	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13202862	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13203443	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13207160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13209846	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13210334	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13212218	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13213257	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13214969	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13215896	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13217234	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13218305	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13219252	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13219395	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13219781	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1698998	1.00[ASN][1000 genomes]
rs17544311	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17544868	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1937782	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2654449	1.00[ASN][1000 genomes]
rs28360530	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34349982	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34360712	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34408317	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34470929	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34519749	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34637217	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34695044	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34897279	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34962226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34971977	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35147121	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35152718	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35207097	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35266471	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35364976	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35388596	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35901431	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35975219	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67457665	1.00[ASN][1000 genomes]
rs71544423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71571331	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71571332	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71571336	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72856580	1.00[ASN][1000 genomes]
rs73416349	1.00[ASN][1000 genomes]
rs73416350	1.00[ASN][1000 genomes]
rs73416351	1.00[ASN][1000 genomes]
rs7451595	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7604	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7746400	1.00[ASN][1000 genomes]
rs7750789	1.00[ASN][1000 genomes]
rs7762397	1.00[ASN][1000 genomes]
rs963720	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	esv2758049	chr6:38588969-38711085	Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	esv2759421	chr6:38588969-38711085	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv427754	chr6:38588969-38711085	Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv428144	chr6:38588969-38711085	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38606200-38607200	Flanking Active TSS	Duodenum Mucosa	Duodenum
2	chr6:38606200-38608800	Active TSS	Right Atrium	heart
3	chr6:38606200-38609000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:38606400-38607200	Flanking Active TSS	Rectal Smooth Muscle	rectum
5	chr6:38606400-38607200	Flanking Active TSS	HUVEC	blood vessel
6	chr6:38606400-38607400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:38606400-38607400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:38606400-38608400	Active TSS	NHLF	lung
9	chr6:38606400-38608600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:38606400-38608800	Active TSS	HUES48 Cell Line	embryonic stem cell
11	chr6:38606400-38608800	Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chr6:38606600-38607200	Flanking Active TSS	Primary hematopoietic stem cells	blood
13	chr6:38606600-38607200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
14	chr6:38606600-38607200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
15	chr6:38606600-38607200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
16	chr6:38606600-38607200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:38606600-38607200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:38606600-38607200	Flanking Active TSS	Adipose Nuclei	Adipose
19	chr6:38606600-38607200	Flanking Active TSS	Liver	Liver
20	chr6:38606600-38607200	Flanking Active TSS	Fetal Brain Female	brain
21	chr6:38606600-38607200	Flanking Active TSS	Placenta	Placenta
22	chr6:38606600-38607200	Flanking Active TSS	Stomach Smooth Muscle	stomach
23	chr6:38606600-38607200	Flanking Bivalent TSS/Enh	Dnd41	blood
24	chr6:38606600-38607200	Flanking Active TSS	GM12878-XiMat	blood
25	chr6:38606600-38607200	Flanking Active TSS	Hela-S3	cervix
26	chr6:38606600-38607200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
27	chr6:38606600-38607200	Flanking Active TSS	NH-A	brain
28	chr6:38606600-38607400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
29	chr6:38606600-38608000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr6:38606600-38608000	Active TSS	Fetal Muscle Trunk	muscle
31	chr6:38606600-38608200	Active TSS	H1 Cell Line	embryonic stem cell
32	chr6:38606600-38608200	Active TSS	Fetal Muscle Leg	muscle
33	chr6:38606600-38608200	Active TSS	Thymus	Thymus
34	chr6:38606600-38608400	Active TSS	Pancreas	Pancrea
35	chr6:38606600-38608600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
36	chr6:38606600-38608800	Active TSS	ES-I3 Cell Line	embryonic stem cell
37	chr6:38606600-38608800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr6:38606600-38608800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
39	chr6:38606600-38608800	Active TSS	Ovary	ovary
40	chr6:38606600-38609000	Active TSS	Lung	lung
41	chr6:38606800-38607200	Flanking Active TSS	Primary B cells from peripheral blood	blood
42	chr6:38606800-38607200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
43	chr6:38606800-38607200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
44	chr6:38606800-38607200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr6:38606800-38607200	Flanking Active TSS	K562	blood
46	chr6:38606800-38608000	Active TSS	Colonic Mucosa	Colon
47	chr6:38606800-38608000	Active TSS	Esophagus	oesophagus
48	chr6:38606800-38608000	Active TSS	Fetal Thymus	thymus
49	chr6:38606800-38608200	Active TSS	Primary B cells from cord blood	blood
50	chr6:38606800-38608200	Active TSS	Brain Inferior Temporal Lobe	brain

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