The 2.0 version of rSNPBase

Variant report

Variant rs28360530
Chromosome Location chr6:38560099-38560100
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:96 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:38523000-38571600 Weak transcription HSMMtube muscle
2 chr6:38534400-38561600 Weak transcription Primary neutrophils fromperipheralblood blood
3 chr6:38535800-38560200 Weak transcription NH-A brain
4 chr6:38535800-38564000 Weak transcription Duodenum Smooth Muscle Duodenum
5 chr6:38535800-38578200 Weak transcription Colon Smooth Muscle Colon
6 chr6:38536400-38560200 Weak transcription Brain Angular Gyrus brain
7 chr6:38536800-38566400 Weak transcription Pancreas Pancrea
8 chr6:38538000-38566800 Weak transcription Esophagus oesophagus
9 chr6:38538600-38561800 Weak transcription iPS-18 Cell Line embryonic stem cell
10 chr6:38538600-38562000 Weak transcription Brain Germinal Matrix brain
11 chr6:38539800-38562800 Weak transcription Fetal Thymus thymus
12 chr6:38540400-38561600 Weak transcription Primary T killer memory cells from peripheral blood blood
13 chr6:38540400-38567800 Weak transcription Primary T killer naive cells fromperipheralblood blood
14 chr6:38540400-38569200 Weak transcription Primary hematopoietic stem cells blood
15 chr6:38541000-38565200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
16 chr6:38541400-38568600 Weak transcription Spleen Spleen
17 chr6:38541600-38567000 Weak transcription Small Intestine intestine
18 chr6:38542000-38563400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
19 chr6:38542800-38560200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
20 chr6:38543400-38560200 Weak transcription Rectal Smooth Muscle rectum
21 chr6:38545000-38561400 Weak transcription Psoas Muscle Psoas
22 chr6:38545400-38566000 Weak transcription Colonic Mucosa Colon
23 chr6:38546200-38563800 Weak transcription Gastric stomach
24 chr6:38547400-38565400 Weak transcription Primary hematopoietic stem cells short term culture blood
25 chr6:38547400-38566600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
26 chr6:38548200-38561600 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
27 chr6:38548200-38563800 Weak transcription Brain Substantia Nigra brain
28 chr6:38548200-38570800 Weak transcription Fetal Kidney kidney
29 chr6:38549000-38570800 Weak transcription Fetal Intestine Small intestine
30 chr6:38553400-38562200 Strong transcription Primary T cells from cord blood blood
31 chr6:38555000-38565800 Strong transcription Primary T helper cells PMA-I stimulated --
32 chr6:38556000-38560200 Weak transcription Aorta Aorta
33 chr6:38556000-38560200 Weak transcription Sigmoid Colon Sigmoid Colon
34 chr6:38556000-38563800 Weak transcription Fetal Heart heart
35 chr6:38556000-38580400 Weak transcription Ovary ovary
36 chr6:38556200-38567400 Weak transcription Lung lung
37 chr6:38556800-38560400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
38 chr6:38556800-38563400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
39 chr6:38557000-38562400 Strong transcription Primary B cells from peripheral blood blood
40 chr6:38557200-38561000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
41 chr6:38557200-38562000 Weak transcription HUVEC blood vessel
42 chr6:38557400-38560200 Weak transcription Hela-S3 cervix
43 chr6:38557400-38561600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
44 chr6:38557400-38571800 Weak transcription Muscle Satellite Cultured Cells --
45 chr6:38557400-38571800 Weak transcription NHDF-Ad bronchial
46 chr6:38557400-38578000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
47 chr6:38557600-38560600 Strong transcription HSMM muscle
48 chr6:38557800-38562800 Strong transcription Primary T helper memory cells from peripheral blood 1 blood
49 chr6:38557800-38571600 Weak transcription HMEC breast
50 chr6:38557800-38572000 Weak transcription NHLF lung

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Last update: Aug 31, 2015