Variant report

Variant	rs13194237
Chromosome Location	chr6:38679052-38679053
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:38671655..38673667-chr6:38677142..38679231,2	MCF-7	breast:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10484855	0.85[EUR][1000 genomes]
rs1130534	0.87[EUR][1000 genomes]
rs11751782	0.85[EUR][1000 genomes]
rs13191302	0.85[EUR][1000 genomes]
rs13196530	0.84[EUR][1000 genomes]
rs13196708	0.85[EUR][1000 genomes]
rs13198900	0.85[EUR][1000 genomes]
rs13199033	0.89[EUR][1000 genomes]
rs13200763	0.85[JPT][hapmap]
rs13202862	0.85[EUR][1000 genomes]
rs13203443	0.85[EUR][1000 genomes]
rs13207160	0.85[EUR][1000 genomes]
rs13209846	0.89[EUR][1000 genomes]
rs13210334	0.88[EUR][1000 genomes]
rs13212218	0.90[EUR][1000 genomes]
rs13213257	0.89[EUR][1000 genomes]
rs13214969	0.81[EUR][1000 genomes]
rs13215896	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13217234	0.85[EUR][1000 genomes]
rs13218305	0.89[EUR][1000 genomes]
rs13219252	0.85[EUR][1000 genomes]
rs13219395	0.85[EUR][1000 genomes]
rs13219781	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17544311	0.85[EUR][1000 genomes]
rs17544868	0.89[EUR][1000 genomes]
rs17622621	0.82[JPT][hapmap]
rs1937780	1.00[JPT][hapmap]
rs1937782	0.89[EUR][1000 genomes]
rs28360530	0.85[EUR][1000 genomes]
rs34349982	0.90[EUR][1000 genomes]
rs34360712	0.85[EUR][1000 genomes]
rs34408317	0.85[EUR][1000 genomes]
rs34470929	0.85[EUR][1000 genomes]
rs34519749	0.89[EUR][1000 genomes]
rs34637217	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34695044	0.85[EUR][1000 genomes]
rs34897279	0.86[EUR][1000 genomes]
rs34962226	0.85[EUR][1000 genomes]
rs34971977	0.92[EUR][1000 genomes]
rs35147121	0.89[EUR][1000 genomes]
rs35152718	0.85[EUR][1000 genomes]
rs35207097	0.90[EUR][1000 genomes]
rs35266471	0.85[EUR][1000 genomes]
rs35364976	0.85[EUR][1000 genomes]
rs35388596	0.89[EUR][1000 genomes]
rs35901431	0.85[EUR][1000 genomes]
rs35975219	0.85[EUR][1000 genomes]
rs6932648	0.90[EUR][1000 genomes]
rs71544423	0.85[EUR][1000 genomes]
rs71571331	0.85[EUR][1000 genomes]
rs71571332	0.85[EUR][1000 genomes]
rs71571336	0.85[EUR][1000 genomes]
rs7604	0.89[EUR][1000 genomes]
rs9369075	0.90[EUR][1000 genomes]
rs9394523	0.90[EUR][1000 genomes]
rs9394524	0.90[EUR][1000 genomes]
rs9462450	0.90[EUR][1000 genomes]
rs9470946	1.00[CHB][hapmap]
rs963720	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	esv2758049	chr6:38588969-38711085	Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	esv2759421	chr6:38588969-38711085	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv427754	chr6:38588969-38711085	Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv428144	chr6:38588969-38711085	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
7	nsv830642	chr6:38645056-38800657	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38678200-38679200	ZNF genes & repeats	GM12878-XiMat	blood

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