Variant report

Variant	rs35364976
Chromosome Location	chr6:38562818-38562819
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10484855	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1130534	0.80[EUR][1000 genomes]
rs11751782	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13191302	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13194237	0.85[EUR][1000 genomes]
rs13196530	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13196708	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13198900	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13199033	0.94[EUR][1000 genomes]
rs13202862	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13203443	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13207160	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13209846	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13210334	0.92[EUR][1000 genomes]
rs13212218	0.92[EUR][1000 genomes]
rs13213257	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13214969	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13215896	0.86[EUR][1000 genomes]
rs13217234	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13218305	0.94[EUR][1000 genomes]
rs13219252	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13219395	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13219781	0.86[EUR][1000 genomes]
rs17544311	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17544868	0.94[EUR][1000 genomes]
rs1937782	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28360530	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34349982	0.92[EUR][1000 genomes]
rs34360712	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34408317	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34470929	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34519749	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34637217	0.86[EUR][1000 genomes]
rs34695044	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34897279	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34962226	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34971977	0.92[EUR][1000 genomes]
rs35147121	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35152718	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35207097	0.92[EUR][1000 genomes]
rs35266471	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35388596	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35901431	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35975219	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71544423	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71571331	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71571332	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71571336	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7451595	0.93[AMR][1000 genomes]
rs7604	0.94[EUR][1000 genomes]
rs963720	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv534620	chr6:38049585-38602064	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38523000-38571600	Weak transcription	HSMMtube	muscle
2	chr6:38535800-38564000	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr6:38535800-38578200	Weak transcription	Colon Smooth Muscle	Colon
4	chr6:38536800-38566400	Weak transcription	Pancreas	Pancrea
5	chr6:38538000-38566800	Weak transcription	Esophagus	oesophagus
6	chr6:38540400-38567800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr6:38540400-38569200	Weak transcription	Primary hematopoietic stem cells	blood
8	chr6:38541000-38565200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr6:38541400-38568600	Weak transcription	Spleen	Spleen
10	chr6:38541600-38567000	Weak transcription	Small Intestine	intestine
11	chr6:38542000-38563400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr6:38545400-38566000	Weak transcription	Colonic Mucosa	Colon
13	chr6:38546200-38563800	Weak transcription	Gastric	stomach
14	chr6:38547400-38565400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr6:38547400-38566600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr6:38548200-38563800	Weak transcription	Brain Substantia Nigra	brain
17	chr6:38548200-38570800	Weak transcription	Fetal Kidney	kidney
18	chr6:38549000-38570800	Weak transcription	Fetal Intestine Small	intestine
19	chr6:38555000-38565800	Strong transcription	Primary T helper cells PMA-I stimulated	--
20	chr6:38556000-38563800	Weak transcription	Fetal Heart	heart
21	chr6:38556000-38580400	Weak transcription	Ovary	ovary
22	chr6:38556200-38567400	Weak transcription	Lung	lung
23	chr6:38556800-38563400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr6:38557400-38571800	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr6:38557400-38571800	Weak transcription	NHDF-Ad	bronchial
26	chr6:38557400-38578000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr6:38557800-38571600	Weak transcription	HMEC	breast
28	chr6:38557800-38572000	Weak transcription	NHLF	lung
29	chr6:38558200-38564000	Strong transcription	Primary T helper cells fromperipheralblood	blood
30	chr6:38558200-38565000	Weak transcription	Fetal Brain Male	brain
31	chr6:38558400-38566000	Strong transcription	Primary B cells from cord blood	blood
32	chr6:38558600-38565800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr6:38558800-38567400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr6:38559000-38563400	Weak transcription	GM12878-XiMat	blood
35	chr6:38559600-38565400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr6:38559600-38567400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr6:38560000-38563000	Strong transcription	Primary monocytes fromperipheralblood	blood
38	chr6:38560400-38563200	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr6:38560600-38563400	Weak transcription	Fetal Stomach	stomach
40	chr6:38560600-38564200	Weak transcription	Osteobl	bone
41	chr6:38560600-38566800	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr6:38560600-38567400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr6:38560600-38568200	Weak transcription	Stomach Smooth Muscle	stomach
44	chr6:38560600-38570800	Weak transcription	Fetal Intestine Large	intestine
45	chr6:38560600-38570800	Weak transcription	Left Ventricle	heart
46	chr6:38560600-38570800	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr6:38560600-38571000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr6:38560600-38571800	Weak transcription	HSMM	muscle
49	chr6:38560600-38574400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr6:38560800-38563000	Weak transcription	NHEK	skin

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