Variant report
| Variant | rs2658977 |
|---|---|
| Chromosome Location | chr12:45282703-45282704 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:49)
| rs_ID | r2[population] |
|---|---|
| rs10880694 | 0.93[CHB][hapmap] |
| rs10880698 | 0.93[CHB][hapmap] |
| rs10880699 | 0.93[CHB][hapmap] |
| rs11182704 | 0.93[CHB][hapmap] |
| rs11182713 | 0.93[CHB][hapmap] |
| rs11182714 | 0.93[CHB][hapmap] |
| rs11182722 | 0.93[CHB][hapmap] |
| rs11182725 | 0.93[CHB][hapmap] |
| rs11182729 | 0.93[CHB][hapmap] |
| rs11182732 | 0.93[CHB][hapmap] |
| rs11182796 | 0.92[CHB][hapmap] |
| rs11182798 | 0.87[CHB][hapmap] |
| rs11182806 | 0.87[CHB][hapmap] |
| rs11182807 | 0.87[CHB][hapmap] |
| rs11182809 | 0.87[CHB][hapmap] |
| rs11534985 | 0.93[CHB][hapmap] |
| rs12227622 | 0.93[CHB][hapmap] |
| rs12228073 | 0.93[CHB][hapmap] |
| rs12228476 | 0.93[CHB][hapmap] |
| rs12581903 | 0.93[CHB][hapmap] |
| rs17095247 | 0.87[CHB][hapmap] |
| rs2272518 | 0.91[ASN][1000 genomes] |
| rs2658950 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs2658976 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs268023 | 0.83[YRI][hapmap] |
| rs268024 | 1.00[YRI][hapmap] |
| rs268025 | 0.83[YRI][hapmap] |
| rs268026 | 0.83[YRI][hapmap] |
| rs268027 | 0.90[YRI][hapmap] |
| rs268028 | 0.83[YRI][hapmap] |
| rs268032 | 0.80[YRI][hapmap] |
| rs268038 | 1.00[YRI][hapmap] |
| rs268039 | 0.80[YRI][hapmap] |
| rs2703052 | 0.93[CHB][hapmap] |
| rs2710418 | 0.81[CHB][hapmap] |
| rs2710421 | 0.98[ASN][1000 genomes] |
| rs2710424 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs2710447 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2731059 | 0.80[YRI][hapmap] |
| rs402960 | 0.83[YRI][hapmap] |
| rs405751 | 0.80[YRI][hapmap] |
| rs421642 | 1.00[YRI][hapmap] |
| rs425857 | 0.80[YRI][hapmap] |
| rs439541 | 0.80[YRI][hapmap] |
| rs447760 | 0.93[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs58724768 | 0.97[ASN][1000 genomes] |
| rs71459276 | 0.95[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs7295338 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs7315817 | 0.87[CHB][hapmap] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:45282600-45282800 | Enhancers | K562 | blood |
