Variant report
Variant | rs2730911 |
---|---|
Chromosome Location | chr12:38987850-38987851 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1021256 | 0.81[EUR][1000 genomes] |
rs1021258 | 1.00[JPT][hapmap];0.93[EUR][1000 genomes] |
rs1038540 | 1.00[JPT][hapmap];0.93[EUR][1000 genomes] |
rs1038543 | 0.93[EUR][1000 genomes] |
rs10747574 | 1.00[JPT][hapmap];0.93[EUR][1000 genomes] |
rs10875959 | 0.91[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.89[ASN][1000 genomes] |
rs10875962 | 1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs10875963 | 1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs1095577 | 1.00[JPT][hapmap];0.86[EUR][1000 genomes] |
rs11168552 | 0.98[ASN][1000 genomes] |
rs11168979 | 0.86[ASN][1000 genomes] |
rs11169095 | 0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
rs11169333 | 0.93[EUR][1000 genomes] |
rs11169407 | 1.00[JPT][hapmap];0.93[EUR][1000 genomes] |
rs12306901 | 0.86[EUR][1000 genomes] |
rs12309958 | 0.91[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.88[ASN][1000 genomes] |
rs12318974 | 0.89[ASN][1000 genomes] |
rs12322362 | 0.99[ASN][1000 genomes] |
rs12580227 | 0.87[ASN][1000 genomes] |
rs1472657 | 0.93[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs1486346 | 0.82[MEX][hapmap] |
rs1486349 | 1.00[JPT][hapmap];0.93[EUR][1000 genomes] |
rs1486350 | 0.93[EUR][1000 genomes] |
rs1486351 | 0.86[EUR][1000 genomes] |
rs1486352 | 0.93[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes] |
rs1486353 | 1.00[JPT][hapmap];0.93[EUR][1000 genomes] |
rs1502631 | 0.98[ASN][1000 genomes] |
rs1615569 | 1.00[JPT][hapmap];0.93[EUR][1000 genomes] |
rs1619885 | 0.93[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes] |
rs1620594 | 0.91[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes] |
rs1620655 | 0.95[JPT][hapmap];0.93[EUR][1000 genomes] |
rs1621467 | 0.93[EUR][1000 genomes] |
rs1624751 | 1.00[JPT][hapmap];0.93[EUR][1000 genomes] |
rs1684419 | 0.93[EUR][1000 genomes] |
rs1684420 | 0.88[JPT][hapmap];0.93[EUR][1000 genomes] |
rs1684421 | 1.00[JPT][hapmap];0.93[EUR][1000 genomes] |
rs1719846 | 0.93[CHD][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes] |
rs1827459 | 0.87[AMR][1000 genomes];0.97[ASN][1000 genomes] |
rs1843640 | 1.00[JPT][hapmap];0.89[EUR][1000 genomes] |
rs1843641 | 0.93[EUR][1000 genomes] |
rs1847181 | 1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs1906043 | 1.00[JPT][hapmap];0.93[EUR][1000 genomes] |
rs2101370 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs2264357 | 0.87[ASN][1000 genomes] |
rs2388058 | 1.00[JPT][hapmap];0.86[EUR][1000 genomes] |
rs2630779 | 0.85[ASN][1000 genomes] |
rs2653739 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs2653757 | 0.86[ASN][1000 genomes] |
rs2653762 | 0.85[ASN][1000 genomes] |
rs2653770 | 0.81[AMR][1000 genomes];0.97[ASN][1000 genomes] |
rs2653777 | 0.98[ASN][1000 genomes] |
rs2730891 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes] |
rs2730923 | 0.98[ASN][1000 genomes] |
rs2730931 | 1.00[CEU][hapmap];0.97[ASN][1000 genomes] |
rs2730938 | 0.91[AMR][1000 genomes];0.99[ASN][1000 genomes] |
rs4238079 | 0.88[ASN][1000 genomes] |
rs4293160 | 1.00[JPT][hapmap] |
rs4494336 | 0.89[EUR][1000 genomes] |
rs4767968 | 0.93[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs5005131 | 1.00[JPT][hapmap] |
rs7957523 | 1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs7976054 | 1.00[JPT][hapmap];0.93[EUR][1000 genomes] |
rs7980889 | 0.89[ASN][1000 genomes] |
rs826864 | 0.81[EUR][1000 genomes] |
rs826878 | 0.90[JPT][hapmap] |
rs826893 | 0.91[JPT][hapmap] |
rs864324 | 0.91[JPT][hapmap] |
rs923200 | 0.88[ASN][1000 genomes] |
rs9645814 | 1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs9805091 | 0.99[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv2422488 | chr12:38103874-39070734 | ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 29 gene(s) | inside rSNPs | diseases |
2 | nsv469356 | chr12:38242029-39187408 | Weak transcription Active TSS ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 30 gene(s) | inside rSNPs | diseases |
3 | nsv558574 | chr12:38242029-39187408 | Strong transcription ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 30 gene(s) | inside rSNPs | diseases |
4 | nsv1039179 | chr12:38453609-39029275 | Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 27 gene(s) | inside rSNPs | diseases |
5 | nsv541476 | chr12:38453609-39029275 | Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 27 gene(s) | inside rSNPs | diseases |
6 | nsv1039538 | chr12:38640895-39180750 | Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 18 gene(s) | inside rSNPs | diseases |
7 | nsv1040304 | chr12:38908242-38995786 | Enhancers Flanking Active TSS Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
8 | nsv1046817 | chr12:38909036-38995330 | Enhancers Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
9 | nsv469358 | chr12:38919524-38989405 | Enhancers Weak transcription Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
10 | nsv558582 | chr12:38919524-38989405 | Enhancers Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
11 | nsv470285 | chr12:38950082-39007749 | Enhancers Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
12 | nsv1039821 | chr12:38959645-39121578 | Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 6 gene(s) | inside rSNPs | diseases |
13 | nsv1053316 | chr12:38959645-39122853 | Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 6 gene(s) | inside rSNPs | diseases |
14 | nsv1043831 | chr12:38979065-39117868 | Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 6 gene(s) | inside rSNPs | diseases |
15 | nsv541479 | chr12:38979065-39117868 | ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 6 gene(s) | inside rSNPs | diseases |
16 | nsv975628 | chr12:38984309-38990955 | Inactive region | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
No data |