Variant report

Variant	rs2759677
Chromosome Location	chr13:53733219-53733220
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2491126	0.91[AFR][1000 genomes]
rs2759673	0.91[AFR][1000 genomes]
rs2759683	0.91[AFR][1000 genomes]
rs2759684	0.91[AFR][1000 genomes]
rs2759686	0.91[AFR][1000 genomes]
rs2759687	0.91[AFR][1000 genomes]
rs2759689	0.91[AFR][1000 genomes]
rs2759692	0.86[AFR][1000 genomes]
rs2806927	0.95[AFR][1000 genomes]
rs2806993	0.86[AFR][1000 genomes]
rs2807005	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53731400-53741800	Weak transcription	Fetal Brain Male	brain
2	chr13:53733200-53734200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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