Variant report

Variant	rs2759689
Chromosome Location	chr13:53715873-53715874
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1909649	1.00[AMR][1000 genomes]
rs2476029	1.00[AMR][1000 genomes]
rs2491126	1.00[AFR][1000 genomes]
rs2759673	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2759677	0.91[AFR][1000 genomes]
rs2759683	1.00[AFR][1000 genomes]
rs2759684	1.00[AFR][1000 genomes]
rs2759685	0.86[AFR][1000 genomes]
rs2759686	1.00[AFR][1000 genomes]
rs2759687	1.00[AFR][1000 genomes]
rs2759692	0.95[AFR][1000 genomes]
rs2759693	0.85[AFR][1000 genomes]
rs2759699	1.00[AMR][1000 genomes]
rs2759702	1.00[AMR][1000 genomes]
rs2759707	1.00[AMR][1000 genomes]
rs2759711	1.00[AMR][1000 genomes]
rs2806927	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2806945	1.00[AMR][1000 genomes]
rs2806958	1.00[AMR][1000 genomes]
rs2806959	1.00[AMR][1000 genomes]
rs2806970	0.83[AFR][1000 genomes]
rs2806983	1.00[AMR][1000 genomes]
rs2806986	1.00[AMR][1000 genomes]
rs2806987	1.00[AMR][1000 genomes]
rs2806991	0.85[AFR][1000 genomes]
rs2806993	0.95[AFR][1000 genomes]
rs2806997	0.86[AFR][1000 genomes]
rs2807003	0.86[AFR][1000 genomes]
rs2807005	1.00[AFR][1000 genomes]
rs58728397	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53711200-53717200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:53713200-53716200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr13:53713600-53719000	Weak transcription	Brain Germinal Matrix	brain
4	chr13:53714800-53719600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr13:53715000-53716200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr13:53715000-53716200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr13:53715000-53716400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr13:53715000-53716600	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr13:53715200-53716000	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr13:53715200-53716800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr13:53715200-53719600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr13:53715400-53716600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr13:53715600-53716200	Enhancers	H9 Cell Line	embryonic stem cell
14	chr13:53715600-53716200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr13:53715600-53717000	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr13:53715600-53718000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr13:53715800-53716200	Enhancers	H1 Cell Line	embryonic stem cell
18	chr13:53715800-53718200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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