Variant report

Variant	rs2806991
Chromosome Location	chr13:53698211-53698212
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs2476029	0.87[AFR][1000 genomes]
rs2491126	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2759673	0.85[AFR][1000 genomes]
rs2759683	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2759684	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2759685	1.00[AMR][1000 genomes]
rs2759686	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2759687	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2759689	0.85[AFR][1000 genomes]
rs2759692	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2759693	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2759695	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2799342	0.83[AFR][1000 genomes]
rs2806927	0.81[AFR][1000 genomes]
rs2806986	0.87[AFR][1000 genomes]
rs2806987	0.87[AFR][1000 genomes]
rs2806989	1.00[AMR][1000 genomes]
rs2806993	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2806997	1.00[AMR][1000 genomes]
rs2807003	1.00[AMR][1000 genomes]
rs2807005	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53695800-53700400	Weak transcription	Fetal Stomach	stomach
2	chr13:53696400-53698800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr13:53696400-53700600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr13:53696400-53700800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr13:53696400-53700800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr13:53696400-53701400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr13:53696600-53703800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr13:53697400-53700200	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr13:53697800-53709000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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