Variant report

Variant	rs2806927
Chromosome Location	chr13:53733483-53733484
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1909649	1.00[AMR][1000 genomes]
rs2476029	1.00[AMR][1000 genomes]
rs2491126	0.95[AFR][1000 genomes]
rs2759673	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2759677	0.95[AFR][1000 genomes]
rs2759683	0.95[AFR][1000 genomes]
rs2759684	0.95[AFR][1000 genomes]
rs2759685	0.82[AFR][1000 genomes]
rs2759686	0.95[AFR][1000 genomes]
rs2759687	0.95[AFR][1000 genomes]
rs2759689	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2759692	0.90[AFR][1000 genomes]
rs2759693	0.81[AFR][1000 genomes]
rs2759699	1.00[AMR][1000 genomes]
rs2759702	1.00[AMR][1000 genomes]
rs2759707	1.00[AMR][1000 genomes]
rs2759711	1.00[AMR][1000 genomes]
rs2806945	1.00[AMR][1000 genomes]
rs2806958	1.00[AMR][1000 genomes]
rs2806959	1.00[AMR][1000 genomes]
rs2806983	1.00[AMR][1000 genomes]
rs2806986	1.00[AMR][1000 genomes]
rs2806987	1.00[AMR][1000 genomes]
rs2806991	0.81[AFR][1000 genomes]
rs2806993	0.90[AFR][1000 genomes]
rs2806997	0.82[AFR][1000 genomes]
rs2807003	0.82[AFR][1000 genomes]
rs2807005	0.95[AFR][1000 genomes]
rs2813578	1.00[AMR][1000 genomes]
rs58728397	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53731400-53741800	Weak transcription	Fetal Brain Male	brain
2	chr13:53733200-53734200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr13:53733400-53736200	Enhancers	Placenta Amnion	Placenta Amnion

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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