Variant report

Variant	rs2806945
Chromosome Location	chr13:53765010-53765011
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1909649	1.00[AMR][1000 genomes]
rs2476029	1.00[AMR][1000 genomes]
rs2759673	1.00[AMR][1000 genomes]
rs2759689	1.00[AMR][1000 genomes]
rs2759699	1.00[AMR][1000 genomes]
rs2759702	1.00[AMR][1000 genomes]
rs2759707	1.00[AMR][1000 genomes]
rs2759711	1.00[AMR][1000 genomes]
rs2806927	1.00[AMR][1000 genomes]
rs2806958	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2806959	1.00[AMR][1000 genomes]
rs2806983	1.00[AMR][1000 genomes]
rs2806986	1.00[AMR][1000 genomes]
rs2806987	1.00[AMR][1000 genomes]
rs2813578	1.00[AMR][1000 genomes]
rs58728397	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53762600-53765200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr13:53762600-53767400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr13:53763400-53767400	Enhancers	Placenta Amnion	Placenta Amnion
4	chr13:53763600-53765600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr13:53763800-53766600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr13:53764000-53766000	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr13:53764000-53767400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr13:53764200-53765400	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr13:53764200-53766400	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr13:53764400-53766200	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr13:53764800-53765800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr13:53764800-53766000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr13:53764800-53766200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr13:53765000-53765400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
15	chr13:53765000-53765400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr13:53765000-53765400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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