Variant report

Variant	rs2759673
Chromosome Location	chr13:53740405-53740406
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1909649	1.00[AMR][1000 genomes]
rs2476029	1.00[AMR][1000 genomes]
rs2491126	1.00[AFR][1000 genomes]
rs2759677	0.91[AFR][1000 genomes]
rs2759683	1.00[AFR][1000 genomes]
rs2759684	1.00[AFR][1000 genomes]
rs2759685	0.86[AFR][1000 genomes]
rs2759686	1.00[AFR][1000 genomes]
rs2759687	1.00[AFR][1000 genomes]
rs2759689	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2759692	0.95[AFR][1000 genomes]
rs2759693	0.85[AFR][1000 genomes]
rs2759699	1.00[AMR][1000 genomes]
rs2759702	1.00[AMR][1000 genomes]
rs2759707	1.00[AMR][1000 genomes]
rs2759711	1.00[AMR][1000 genomes]
rs2806927	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2806945	1.00[AMR][1000 genomes]
rs2806958	1.00[AMR][1000 genomes]
rs2806959	1.00[AMR][1000 genomes]
rs2806970	0.83[AFR][1000 genomes]
rs2806983	1.00[AMR][1000 genomes]
rs2806986	1.00[AMR][1000 genomes]
rs2806987	1.00[AMR][1000 genomes]
rs2806991	0.85[AFR][1000 genomes]
rs2806993	0.95[AFR][1000 genomes]
rs2806997	0.86[AFR][1000 genomes]
rs2807003	0.86[AFR][1000 genomes]
rs2807005	1.00[AFR][1000 genomes]
rs2813578	1.00[AMR][1000 genomes]
rs58728397	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53731400-53741800	Weak transcription	Fetal Brain Male	brain
2	chr13:53735000-53741800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr13:53738400-53740600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr13:53739800-53741000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr13:53739800-53741000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr13:53739800-53743800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr13:53740000-53741000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr13:53740000-53741800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr13:53740000-53741800	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr13:53740400-53740600	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr13:53740400-53741600	Weak transcription	Brain Germinal Matrix	brain
12	chr13:53740400-53745000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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