Variant report

Variant	rs2759699
Chromosome Location	chr13:53684864-53684865
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1909649	1.00[AMR][1000 genomes]
rs2476029	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2759673	1.00[AMR][1000 genomes]
rs2759689	1.00[AMR][1000 genomes]
rs2759695	0.92[AFR][1000 genomes]
rs2759702	1.00[AMR][1000 genomes]
rs2759707	1.00[AMR][1000 genomes]
rs2759711	1.00[AMR][1000 genomes]
rs2806927	1.00[AMR][1000 genomes]
rs2806945	1.00[AMR][1000 genomes]
rs2806958	1.00[AMR][1000 genomes]
rs2806959	1.00[AMR][1000 genomes]
rs2806983	1.00[AMR][1000 genomes]
rs2806986	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2806987	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58728397	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832613	chr13:53524319-53687188	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53681800-53695000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr13:53684400-53685400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr13:53684400-53685600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr13:53684800-53685400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr13:53684800-53685400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links