Variant report

Variant	rs2806959
Chromosome Location	chr13:53787980-53787981
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1909649	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1909651	0.81[AFR][1000 genomes]
rs2476029	1.00[AMR][1000 genomes]
rs2759673	1.00[AMR][1000 genomes]
rs2759689	1.00[AMR][1000 genomes]
rs2759699	1.00[AMR][1000 genomes]
rs2759702	1.00[AMR][1000 genomes]
rs2759707	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2759711	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2806927	1.00[AMR][1000 genomes]
rs2806945	1.00[AMR][1000 genomes]
rs2806957	0.81[AFR][1000 genomes]
rs2806958	1.00[AMR][1000 genomes]
rs2806983	1.00[AMR][1000 genomes]
rs2806986	1.00[AMR][1000 genomes]
rs2806987	1.00[AMR][1000 genomes]
rs2813578	1.00[AMR][1000 genomes]
rs58728397	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv1840677	chr13:53774627-53791895	Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53786400-53788400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr13:53787800-53789000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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