Variant report

Variant	rs58728397
Chromosome Location	chr13:53834411-53834412
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1909649	1.00[AMR][1000 genomes]
rs2476029	1.00[AMR][1000 genomes]
rs2759673	1.00[AMR][1000 genomes]
rs2759689	1.00[AMR][1000 genomes]
rs2759699	1.00[AMR][1000 genomes]
rs2759702	1.00[AMR][1000 genomes]
rs2759707	1.00[AMR][1000 genomes]
rs2759711	1.00[AMR][1000 genomes]
rs2806927	1.00[AMR][1000 genomes]
rs2806945	1.00[AMR][1000 genomes]
rs2806958	1.00[AMR][1000 genomes]
rs2806959	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2806983	1.00[AMR][1000 genomes]
rs2806986	1.00[AMR][1000 genomes]
rs2806987	1.00[AMR][1000 genomes]
rs2813578	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2756368	chr13:53824599-53923599	Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53826800-53834600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr13:53834000-53834600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
3	chr13:53834200-53835400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr13:53834400-53834800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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