Variant report

Variant	rs2759683
Chromosome Location	chr13:53725563-53725564
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs2491126	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2759673	1.00[AFR][1000 genomes]
rs2759677	0.91[AFR][1000 genomes]
rs2759684	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2759685	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2759686	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2759687	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2759689	1.00[AFR][1000 genomes]
rs2759692	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2759693	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2759695	1.00[AMR][1000 genomes]
rs2806927	0.95[AFR][1000 genomes]
rs2806970	0.83[AFR][1000 genomes]
rs2806989	1.00[AMR][1000 genomes]
rs2806991	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2806993	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2806997	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2807003	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2807005	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53719400-53725800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr13:53719400-53725800	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr13:53724400-53725800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr13:53725000-53725800	Weak transcription	Brain Germinal Matrix	brain
5	chr13:53725200-53725600	Weak transcription	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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