Variant report

Variant	rs2807003
Chromosome Location	chr13:53720150-53720151
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs2491126	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2759673	0.86[AFR][1000 genomes]
rs2759683	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2759684	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2759685	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2759686	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2759687	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2759689	0.86[AFR][1000 genomes]
rs2759692	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2759693	1.00[AMR][1000 genomes]
rs2759695	1.00[AMR][1000 genomes]
rs2806927	0.82[AFR][1000 genomes]
rs2806989	1.00[AMR][1000 genomes]
rs2806991	1.00[AMR][1000 genomes]
rs2806993	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2806997	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2807005	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53719400-53725800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr13:53719400-53725800	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr13:53719600-53723600	Weak transcription	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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