Variant report

Variant	rs2806997
Chromosome Location	chr13:53710237-53710238
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1361886	0.86[ASN][1000 genomes]
rs1909652	1.00[ASN][1000 genomes]
rs2226192	0.86[ASN][1000 genomes]
rs2491126	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2759673	0.86[AFR][1000 genomes]
rs2759683	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2759684	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2759685	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2759686	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2759687	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2759689	0.86[AFR][1000 genomes]
rs2759691	1.00[ASN][1000 genomes]
rs2759692	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2759693	1.00[AMR][1000 genomes]
rs2759695	1.00[AMR][1000 genomes]
rs2759696	1.00[ASN][1000 genomes]
rs2759697	1.00[ASN][1000 genomes]
rs2759701	1.00[ASN][1000 genomes]
rs2806927	0.82[AFR][1000 genomes]
rs2806979	0.86[ASN][1000 genomes]
rs2806989	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2806990	1.00[ASN][1000 genomes]
rs2806991	1.00[AMR][1000 genomes]
rs2806992	1.00[ASN][1000 genomes]
rs2806993	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2806998	1.00[ASN][1000 genomes]
rs2807003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2807005	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7336499	1.00[ASN][1000 genomes]
rs74086456	0.86[ASN][1000 genomes]
rs877482	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53708800-53715200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr13:53709600-53710800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr13:53710000-53715600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr13:53710200-53713000	Enhancers	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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