Variant report

Variant	rs2780461
Chromosome Location	chr13:52140460-52140461
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:52025527..52027084-chr13:52138971..52141023,2	MCF-7	breast:
2	chr13:52024180..52026043-chr13:52139073..52141757,2	K562	blood:

Variant related genes	Relation type
ENSG00000236778	Chromatin interaction
ENSG00000102786	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs12146894	0.87[JPT][hapmap]
rs12427748	1.00[CEU][hapmap]
rs1475195	1.00[CEU][hapmap];0.87[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17075907	0.82[EUR][1000 genomes]
rs17532412	1.00[CEU][hapmap];0.87[JPT][hapmap]
rs17597215	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17597531	1.00[CEU][hapmap];0.87[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1885854	1.00[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.83[EUR][1000 genomes]
rs2296029	1.00[CEU][hapmap];0.87[JPT][hapmap]
rs2897944	0.87[JPT][hapmap]
rs3908968	1.00[CEU][hapmap];0.80[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4555048	1.00[CEU][hapmap];0.87[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs483879	0.94[CEU][hapmap];0.81[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs488261	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs491103	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9526783	1.00[CEU][hapmap];0.87[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9526786	1.00[CEU][hapmap];0.87[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9526788	1.00[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9526793	1.00[CEU][hapmap];0.87[JPT][hapmap]
rs9535714	1.00[CEU][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9535715	1.00[CEU][hapmap];0.87[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9535717	1.00[CEU][hapmap];0.86[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9535722	1.00[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9535735	0.88[EUR][1000 genomes]
rs9535737	0.88[EUR][1000 genomes]
rs9535738	0.88[EUR][1000 genomes]
rs9535739	1.00[CEU][hapmap];0.87[JPT][hapmap];0.88[EUR][1000 genomes]
rs9535741	0.87[EUR][1000 genomes]
rs9535744	1.00[CEU][hapmap];0.87[JPT][hapmap]
rs9535746	1.00[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.83[EUR][1000 genomes]
rs9535747	0.94[CEU][hapmap];0.88[JPT][hapmap]
rs9535748	0.87[JPT][hapmap]
rs9535749	0.93[CEU][hapmap];0.87[JPT][hapmap]
rs9535750	0.87[CEU][hapmap];0.88[JPT][hapmap]
rs9535753	0.94[CEU][hapmap];0.88[JPT][hapmap]
rs9535756	0.94[CEU][hapmap];0.82[JPT][hapmap]

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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