Variant report

Variant	rs488261
Chromosome Location	chr13:52137421-52137422
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:52025813..52028361-chr13:52135835..52138227,3	K562	blood:
2	chr13:52024546..52028811-chr13:52131702..52137649,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000236778	Chromatin interaction
ENSG00000224892	Chromatin interaction
ENSG00000102786	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1475195	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs17075907	1.00[AFR][1000 genomes]
rs17532524	1.00[AFR][1000 genomes]
rs17532936	1.00[AFR][1000 genomes]
rs17597215	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs17597531	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs1885854	1.00[AFR][1000 genomes]
rs2296028	1.00[AFR][1000 genomes]
rs2296029	1.00[AFR][1000 genomes]
rs2780461	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3908968	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs41292776	1.00[AFR][1000 genomes]
rs4555048	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs483879	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs491103	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60757273	1.00[AFR][1000 genomes]
rs73199734	1.00[AFR][1000 genomes]
rs73199746	1.00[AFR][1000 genomes]
rs9526783	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs9526786	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs9526788	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs9526793	1.00[AFR][1000 genomes]
rs9526794	1.00[AFR][1000 genomes]
rs9535714	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs9535715	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs9535717	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9535722	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9535735	0.83[EUR][1000 genomes]
rs9535737	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs9535738	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs9535739	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs9535741	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs9535743	1.00[AFR][1000 genomes]
rs9535745	1.00[AFR][1000 genomes]
rs9535746	1.00[AFR][1000 genomes]
rs9535747	1.00[AFR][1000 genomes]
rs9535750	1.00[AFR][1000 genomes]
rs9535751	1.00[AFR][1000 genomes]
rs9535752	1.00[AFR][1000 genomes]
rs9535755	1.00[AFR][1000 genomes]
rs9535756	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1797261	chr13:52100949-52139113	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52131000-52138800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr13:52133400-52138800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr13:52133600-52137800	Weak transcription	Hela-S3	cervix
4	chr13:52136400-52138000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr13:52137000-52139000	Enhancers	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links