Variant report
| Variant | rs491103 |
|---|---|
| Chromosome Location | chr13:52149353-52149354 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr13:52147811..52150422-chr13:52150525..52153278,2 | MCF-7 | breast: | |
| 2 | chr13:52022285..52029211-chr13:52148229..52167071,88 | MCF-7 | breast: | |
| 3 | chr13:52098497..52100314-chr13:52149330..52151605,2 | MCF-7 | breast: | |
| 4 | chr13:52025505..52027236-chr13:52147372..52149433,2 | K562 | blood: | |
| 5 | chr13:52025505..52027114-chr13:52147655..52149776,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000102786 | Chromatin interaction |
| ENSG00000236778 | Chromatin interaction |
| ENSG00000224892 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs1475195 | 0.87[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs17075907 | 0.80[EUR][1000 genomes] |
| rs17597215 | 0.87[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs17597531 | 0.87[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs1885854 | 0.81[EUR][1000 genomes] |
| rs2780461 | 0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs3908968 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs4555048 | 0.87[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs483879 | 0.97[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs488261 | 0.89[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs9526783 | 0.87[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs9526786 | 0.87[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs9526788 | 0.83[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs9535714 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs9535715 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs9535717 | 0.94[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs9535722 | 0.94[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs9535735 | 0.86[EUR][1000 genomes] |
| rs9535737 | 0.86[EUR][1000 genomes] |
| rs9535738 | 0.86[EUR][1000 genomes] |
| rs9535739 | 0.86[EUR][1000 genomes] |
| rs9535741 | 0.85[EUR][1000 genomes] |
| rs9535746 | 0.81[EUR][1000 genomes] |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
