Variant report

Variant	rs9535735
Chromosome Location	chr13:52270046-52270047
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:52024719..52027626-chr13:52269395..52271290,2	MCF-7	breast:
2	chr13:52255941..52258670-chr13:52268396..52270425,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000236778	Chromatin interaction
ENSG00000102786	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1060562	0.96[ASN][1000 genomes]
rs12146894	0.96[ASN][1000 genomes]
rs12427748	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1475195	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17075907	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17532412	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17532524	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17532936	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17597215	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17597531	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1885854	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2296028	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2296029	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2780461	0.88[EUR][1000 genomes]
rs2897944	0.95[ASN][1000 genomes]
rs3908968	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs41292776	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4555048	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs483879	0.82[EUR][1000 genomes]
rs488261	0.83[EUR][1000 genomes]
rs491103	0.86[EUR][1000 genomes]
rs60757273	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73199734	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73199746	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9526783	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9526786	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9526788	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9526793	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9526794	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9535714	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9535715	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9535717	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9535722	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9535734	0.96[ASN][1000 genomes]
rs9535737	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9535738	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9535739	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9535741	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9535743	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9535744	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9535745	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9535746	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9535747	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9535748	0.95[ASN][1000 genomes]
rs9535749	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9535750	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9535751	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9535752	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9535753	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9535755	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9535756	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832612	chr13:52176983-52362525	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52234000-52277800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr13:52247200-52277400	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr13:52247600-52300200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr13:52247600-52300200	Weak transcription	Fetal Lung	lung
5	chr13:52249400-52307600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr13:52254400-52270200	Weak transcription	Esophagus	oesophagus
7	chr13:52254400-52273200	Weak transcription	Pancreas	Pancrea
8	chr13:52254600-52293000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr13:52254600-52301800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr13:52255400-52273200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr13:52255600-52273200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr13:52256400-52277800	Weak transcription	HSMMtube	muscle
13	chr13:52258000-52273400	Weak transcription	Primary hematopoietic stem cells	blood
14	chr13:52258000-52280400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr13:52258600-52271600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr13:52258600-52273400	Weak transcription	NHEK	skin
17	chr13:52258800-52270600	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr13:52259200-52278000	Weak transcription	Primary T cells from cord blood	blood
19	chr13:52259400-52273200	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr13:52259400-52277800	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr13:52261000-52273800	Weak transcription	Primary B cells from cord blood	blood
22	chr13:52263400-52273200	Weak transcription	Gastric	stomach
23	chr13:52263400-52295600	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr13:52264000-52270400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr13:52264000-52277600	Weak transcription	NH-A	brain
26	chr13:52264000-52300000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr13:52264200-52270200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr13:52264200-52273000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr13:52264200-52277600	Weak transcription	HepG2	liver
30	chr13:52264200-52277800	Weak transcription	HMEC	breast
31	chr13:52264200-52277800	Weak transcription	HSMM	muscle
32	chr13:52264200-52278000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr13:52264200-52280800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr13:52269000-52273200	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr13:52269400-52270800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr13:52269600-52270400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
37	chr13:52269600-52270600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr13:52269800-52278800	Weak transcription	Primary T cells fromperipheralblood	blood

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