Variant report

Variant	rs9535738
Chromosome Location	chr13:52277693-52277694
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1060562	0.96[ASN][1000 genomes]
rs12146894	1.00[CHB][hapmap];0.96[ASN][1000 genomes]
rs12427748	1.00[CHB][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1475195	0.89[CHB][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17075907	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17532412	1.00[CHB][hapmap];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17532524	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17532936	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17597215	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17597531	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1885854	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2296028	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2296029	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2780461	0.88[EUR][1000 genomes]
rs2897944	1.00[CHB][hapmap];0.95[ASN][1000 genomes]
rs3908968	0.88[CHB][hapmap];0.84[JPT][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs41292776	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4555048	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs483879	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs488261	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs491103	0.86[EUR][1000 genomes]
rs60757273	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73199734	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73199746	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9526783	0.89[CHB][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9526786	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9526788	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9526793	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9526794	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9535714	0.87[CHB][hapmap];0.82[JPT][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9535715	0.89[CHB][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9535717	0.83[JPT][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9535722	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9535734	0.96[ASN][1000 genomes]
rs9535735	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9535737	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9535739	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9535741	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9535743	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9535744	1.00[CHB][hapmap];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9535745	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9535746	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9535747	0.89[CHB][hapmap];1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9535748	1.00[CHB][hapmap];0.95[ASN][1000 genomes]
rs9535749	0.88[CHB][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9535750	0.89[CHB][hapmap];1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9535751	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9535752	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9535753	0.89[CHB][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9535755	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9535756	0.89[CHB][hapmap];1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832612	chr13:52176983-52362525	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52234000-52277800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr13:52247600-52300200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr13:52247600-52300200	Weak transcription	Fetal Lung	lung
4	chr13:52249400-52307600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr13:52254600-52293000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr13:52254600-52301800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr13:52256400-52277800	Weak transcription	HSMMtube	muscle
8	chr13:52258000-52280400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr13:52259200-52278000	Weak transcription	Primary T cells from cord blood	blood
10	chr13:52259400-52277800	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr13:52263400-52295600	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr13:52264000-52300000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr13:52264200-52277800	Weak transcription	HMEC	breast
14	chr13:52264200-52277800	Weak transcription	HSMM	muscle
15	chr13:52264200-52278000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr13:52264200-52280800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr13:52269800-52278800	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr13:52270400-52277800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr13:52270400-52279000	Weak transcription	Esophagus	oesophagus
20	chr13:52270400-52293200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr13:52270800-52278000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr13:52270800-52301600	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr13:52271200-52278200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr13:52271200-52301800	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr13:52271800-52281400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr13:52272000-52277800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr13:52272200-52277800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr13:52272200-52288800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr13:52272400-52277800	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr13:52272400-52279600	Weak transcription	Brain Angular Gyrus	brain
31	chr13:52272400-52287600	Weak transcription	NHDF-Ad	bronchial
32	chr13:52272400-52288800	Weak transcription	NHLF	lung
33	chr13:52272600-52277800	Weak transcription	Osteobl	bone
34	chr13:52273400-52279200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr13:52273400-52291800	Weak transcription	Brain Anterior Caudate	brain
36	chr13:52273600-52279000	Weak transcription	Gastric	stomach
37	chr13:52273600-52291400	Weak transcription	Brain Hippocampus Middle	brain
38	chr13:52273600-52293000	Weak transcription	Right Atrium	heart
39	chr13:52273600-52293200	Weak transcription	Left Ventricle	heart
40	chr13:52273600-52295200	Weak transcription	Right Ventricle	heart
41	chr13:52273600-52295600	Weak transcription	Pancreas	Pancrea
42	chr13:52273600-52295800	Weak transcription	Spleen	Spleen
43	chr13:52274000-52277800	Weak transcription	Primary B cells from cord blood	blood
44	chr13:52274000-52277800	Weak transcription	Primary hematopoietic stem cells	blood
45	chr13:52274000-52278400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr13:52274000-52279200	Weak transcription	Aorta	Aorta
47	chr13:52274000-52295600	Weak transcription	Ovary	ovary
48	chr13:52274000-52300400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr13:52274400-52277800	Weak transcription	Monocytes-CD14+_RO01746	blood
50	chr13:52274400-52278000	Weak transcription	NHEK	skin

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