Variant report
Variant | rs2782332 |
---|---|
Chromosome Location | chr10:28098202-28098203 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr10:28096701..28099351-chr10:28115513..28118158,2 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs12357953 | 0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs12773654 | 0.92[ASN][1000 genomes] |
rs2492906 | 0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2637290 | 0.86[ASN][1000 genomes] |
rs2637321 | 0.88[ASN][1000 genomes] |
rs2637322 | 0.88[ASN][1000 genomes] |
rs2637323 | 0.88[ASN][1000 genomes] |
rs2637324 | 0.86[ASN][1000 genomes] |
rs2637325 | 0.88[ASN][1000 genomes] |
rs2637333 | 0.87[ASN][1000 genomes] |
rs2782333 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2782338 | 0.93[ASN][1000 genomes] |
rs2782339 | 0.88[ASN][1000 genomes] |
rs2782340 | 0.88[ASN][1000 genomes] |
rs2782341 | 0.88[ASN][1000 genomes] |
rs2782342 | 0.88[ASN][1000 genomes] |
rs2815488 | 0.88[ASN][1000 genomes] |
rs2815489 | 0.88[ASN][1000 genomes] |
rs2815491 | 0.82[ASN][1000 genomes] |
rs2815493 | 0.88[ASN][1000 genomes] |
rs2815494 | 0.80[AMR][1000 genomes];0.91[ASN][1000 genomes] |
rs2815499 | 0.93[ASN][1000 genomes] |
rs2815504 | 0.84[AMR][1000 genomes];0.97[ASN][1000 genomes] |
rs2991934 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2991935 | 0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs2999978 | 0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs35267408 | 0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs4749261 | 0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs7081305 | 0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv831813 | chr10:28017606-28200651 | Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
2 | nsv917149 | chr10:28018919-28688694 | Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
3 | nsv971859 | chr10:28070066-28271252 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr10:28094600-28099400 | Weak transcription | Ovary | ovary |