Variant report

Variant	rs2815504
Chromosome Location	chr10:28092421-28092422
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10763622	1.00[CEU][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes]
rs12357953	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.84[TSI][hapmap];0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12773654	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1334718	0.82[EUR][1000 genomes]
rs1907396	0.81[EUR][1000 genomes]
rs1931888	1.00[CEU][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes]
rs2246842	0.82[TSI][hapmap];0.81[EUR][1000 genomes]
rs2251454	0.83[EUR][1000 genomes]
rs2451925	0.81[EUR][1000 genomes]
rs2451927	0.81[EUR][1000 genomes]
rs2492903	0.81[EUR][1000 genomes]
rs2492904	0.81[EUR][1000 genomes]
rs2492906	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2492911	0.82[TSI][hapmap]
rs2637287	0.81[EUR][1000 genomes]
rs2637288	0.81[EUR][1000 genomes]
rs2637289	0.81[EUR][1000 genomes]
rs2637290	0.90[CHB][hapmap];0.97[CHD][hapmap];0.81[GIH][hapmap];0.81[JPT][hapmap];0.81[MEX][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2637291	0.81[EUR][1000 genomes]
rs2637293	0.87[TSI][hapmap]
rs2637320	1.00[CHB][hapmap];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2637321	1.00[CHB][hapmap];0.85[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2637322	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2637323	1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.85[JPT][hapmap];0.90[MEX][hapmap];0.87[TSI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2637324	1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.85[JPT][hapmap];0.90[MEX][hapmap];0.87[TSI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2637325	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2637333	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2782332	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2782333	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2782334	0.94[EUR][1000 genomes]
rs2782335	0.85[EUR][1000 genomes]
rs2782336	0.85[EUR][1000 genomes]
rs2782338	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2782339	1.00[CHB][hapmap];0.85[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2782340	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2782341	1.00[CHB][hapmap];0.84[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2782342	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2782343	0.82[TSI][hapmap];0.81[EUR][1000 genomes]
rs2815477	0.87[TSI][hapmap]
rs2815479	0.87[TSI][hapmap]
rs2815482	0.81[EUR][1000 genomes]
rs2815484	0.81[EUR][1000 genomes]
rs2815485	0.81[EUR][1000 genomes]
rs2815486	0.81[EUR][1000 genomes]
rs2815487	0.81[EUR][1000 genomes]
rs2815488	1.00[CHB][hapmap];0.85[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2815489	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2815490	0.81[EUR][1000 genomes]
rs2815491	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2815493	1.00[CHB][hapmap];0.85[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2815494	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2815497	0.83[EUR][1000 genomes]
rs2815498	0.83[EUR][1000 genomes]
rs2815499	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2815502	0.85[EUR][1000 genomes]
rs2815503	0.85[EUR][1000 genomes]
rs2815506	0.89[EUR][1000 genomes]
rs2991934	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2991935	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2999978	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs35267408	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4749261	1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.84[TSI][hapmap];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6481482	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs6481483	0.83[CEU][hapmap];0.91[EUR][1000 genomes]
rs7081305	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831813	chr10:28017606-28200651	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv971859	chr10:28070066-28271252	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28081800-28096600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:28088200-28092800	Weak transcription	Ovary	ovary
3	chr10:28092400-28094000	Enhancers	Placenta Amnion	Placenta Amnion

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