Variant report

Variant	rs2251454
Chromosome Location	chr10:28082063-28082064
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10763622	0.95[CHB][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10826347	0.88[JPT][hapmap]
rs11006736	0.91[CHB][hapmap]
rs12355412	0.86[CHB][hapmap]
rs12355413	0.91[CHB][hapmap]
rs1334718	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1907386	0.94[CEU][hapmap]
rs1907390	0.87[CEU][hapmap]
rs1907392	0.82[CEU][hapmap]
rs1907396	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1931888	0.95[CHB][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2246842	0.94[CEU][hapmap];0.83[JPT][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2451917	0.87[CEU][hapmap]
rs2451925	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2451927	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2492903	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2492904	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2492911	0.87[CEU][hapmap]
rs2492912	0.87[CEU][hapmap]
rs2492914	0.82[CEU][hapmap]
rs2492916	0.82[CEU][hapmap]
rs2637287	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2637288	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2637289	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2637290	0.94[CEU][hapmap];0.93[EUR][1000 genomes]
rs2637291	0.94[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2637293	0.94[CEU][hapmap]
rs2637297	0.94[CEU][hapmap]
rs2637303	0.87[CEU][hapmap]
rs2637320	0.94[CEU][hapmap];0.94[EUR][1000 genomes]
rs2637321	0.94[CEU][hapmap];0.92[EUR][1000 genomes]
rs2637322	0.93[EUR][1000 genomes]
rs2637323	0.94[CEU][hapmap];0.93[EUR][1000 genomes]
rs2637324	0.94[CEU][hapmap];0.93[EUR][1000 genomes]
rs2637325	0.85[EUR][1000 genomes]
rs2637333	0.92[EUR][1000 genomes]
rs2782334	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2782335	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2782336	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2782338	0.94[EUR][1000 genomes]
rs2782339	0.94[CEU][hapmap];0.93[EUR][1000 genomes]
rs2782340	0.93[EUR][1000 genomes]
rs2782341	0.93[CEU][hapmap];0.93[EUR][1000 genomes]
rs2782342	0.93[EUR][1000 genomes]
rs2782343	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2815477	0.94[CEU][hapmap]
rs2815478	0.94[CEU][hapmap]
rs2815479	0.94[CEU][hapmap]
rs2815482	0.94[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2815483	0.94[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs2815484	0.94[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2815485	0.94[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2815486	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2815487	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2815488	0.94[CEU][hapmap];0.93[EUR][1000 genomes]
rs2815489	0.93[EUR][1000 genomes]
rs2815490	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2815491	0.93[EUR][1000 genomes]
rs2815493	0.94[CEU][hapmap];0.93[EUR][1000 genomes]
rs2815494	0.94[EUR][1000 genomes]
rs2815497	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2815498	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2815499	0.94[EUR][1000 genomes]
rs2815502	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2815503	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2815504	0.83[EUR][1000 genomes]
rs2815506	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2815559	0.87[CEU][hapmap]
rs2815560	0.87[CEU][hapmap]
rs2815561	0.87[CEU][hapmap]
rs2815564	0.87[CEU][hapmap]
rs2815569	0.82[CEU][hapmap]
rs2815570	0.82[CEU][hapmap]
rs2815573	0.82[CEU][hapmap]
rs2815574	0.82[CEU][hapmap]
rs2815575	0.82[CEU][hapmap]
rs2815576	0.82[CEU][hapmap]
rs2815577	0.82[CEU][hapmap]
rs2999980	0.82[CEU][hapmap]
rs6481482	0.82[CHB][hapmap];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6481483	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831813	chr10:28017606-28200651	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv971859	chr10:28070066-28271252	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28081800-28096600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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