Variant report

Variant	rs1907392
Chromosome Location	chr10:27994668-27994669
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs11015956	0.87[CEU][hapmap]
rs11015961	0.85[JPT][hapmap]
rs16928202	0.86[JPT][hapmap]
rs1907376	0.88[EUR][1000 genomes]
rs1907386	0.88[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1907390	0.94[CEU][hapmap];0.85[EUR][1000 genomes]
rs1907391	0.85[EUR][1000 genomes]
rs2246842	0.88[CEU][hapmap];0.87[TSI][hapmap]
rs2246903	0.84[EUR][1000 genomes]
rs2252651	0.93[EUR][1000 genomes]
rs2451915	0.85[EUR][1000 genomes]
rs2451916	0.85[EUR][1000 genomes]
rs2451917	0.94[CEU][hapmap];0.85[EUR][1000 genomes]
rs2451919	0.89[EUR][1000 genomes]
rs2451920	0.91[EUR][1000 genomes]
rs2492911	0.83[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2492912	0.94[CEU][hapmap];0.91[TSI][hapmap];0.85[EUR][1000 genomes]
rs2492913	0.89[EUR][1000 genomes]
rs2492914	1.00[CEU][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs2492915	0.89[EUR][1000 genomes]
rs2492916	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs2492917	0.91[EUR][1000 genomes]
rs2637290	0.88[CEU][hapmap];0.83[TSI][hapmap]
rs2637291	0.87[CEU][hapmap]
rs2637293	0.88[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2637297	0.88[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2637303	0.94[CEU][hapmap];0.91[TSI][hapmap];0.85[EUR][1000 genomes]
rs2637304	0.85[EUR][1000 genomes]
rs2637314	0.89[EUR][1000 genomes]
rs2637315	0.81[ASN][1000 genomes]
rs2637320	0.88[CEU][hapmap]
rs2637321	0.88[CEU][hapmap]
rs2637323	0.88[CEU][hapmap];0.91[TSI][hapmap]
rs2637324	0.88[CEU][hapmap];0.91[TSI][hapmap]
rs2637327	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2637328	0.83[EUR][1000 genomes]
rs2782339	0.88[CEU][hapmap]
rs2782341	0.86[CEU][hapmap]
rs2782343	0.88[CEU][hapmap];0.87[TSI][hapmap]
rs2815477	0.88[ASW][hapmap];0.88[CEU][hapmap];0.98[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.91[EUR][1000 genomes]
rs2815478	0.88[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2815479	0.88[CEU][hapmap];0.91[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.91[TSI][hapmap];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2815482	0.88[CEU][hapmap]
rs2815483	0.87[CEU][hapmap]
rs2815484	0.88[CEU][hapmap]
rs2815485	0.88[CEU][hapmap]
rs2815488	0.88[CEU][hapmap]
rs2815493	0.88[CEU][hapmap]
rs2815559	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2815560	0.94[CEU][hapmap];0.91[TSI][hapmap];0.85[EUR][1000 genomes]
rs2815561	0.94[CEU][hapmap];0.91[TSI][hapmap];0.85[EUR][1000 genomes]
rs2815562	0.85[EUR][1000 genomes]
rs2815564	0.94[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.87[TSI][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2815565	0.85[EUR][1000 genomes]
rs2815566	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2815569	1.00[CEU][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs2815570	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs2815571	0.89[EUR][1000 genomes]
rs2815573	1.00[CEU][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs2815574	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs2815575	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs2815576	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs2815577	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2999980	1.00[CEU][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs5024546	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv3368825	chr10:27864181-28043820	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27985800-28001400	Weak transcription	Aorta	Aorta
2	chr10:27992000-28001400	Weak transcription	Ovary	ovary
3	chr10:27992200-28001600	Weak transcription	Stomach Smooth Muscle	stomach

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