Variant report

Variant	rs2815571
Chromosome Location	chr10:27988603-27988604
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27988497..27989198-chr10:28009366..28009969,2	MCF-7	breast:
2	chr10:27987243..27989014-chr10:28013430..28015177,2	MCF-7	breast:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10829311	0.82[ASN][1000 genomes]
rs11015956	0.94[ASN][1000 genomes]
rs11015964	0.82[ASN][1000 genomes]
rs11015965	0.82[ASN][1000 genomes]
rs11015966	0.82[ASN][1000 genomes]
rs12217587	1.00[ASN][1000 genomes]
rs12217663	0.93[ASN][1000 genomes]
rs12257885	0.94[ASN][1000 genomes]
rs12258832	0.82[ASN][1000 genomes]
rs1907386	0.83[EUR][1000 genomes]
rs1907390	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1907391	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1907392	0.89[EUR][1000 genomes]
rs2246903	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2252651	0.83[EUR][1000 genomes]
rs2451915	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2451916	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2451917	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2451919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2451920	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2492911	0.89[EUR][1000 genomes]
rs2492912	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2492913	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2492914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2492915	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2492916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2492917	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2637293	0.83[EUR][1000 genomes]
rs2637297	0.83[EUR][1000 genomes]
rs2637303	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2637304	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2637314	0.89[EUR][1000 genomes]
rs2637327	0.88[EUR][1000 genomes]
rs2637328	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2815477	0.85[EUR][1000 genomes]
rs2815478	0.83[EUR][1000 genomes]
rs2815479	0.83[EUR][1000 genomes]
rs2815559	0.88[EUR][1000 genomes]
rs2815560	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2815561	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2815562	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2815563	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2815564	0.88[EUR][1000 genomes]
rs2815565	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2815566	0.84[EUR][1000 genomes]
rs2815567	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2815569	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2815570	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2815573	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2815574	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2815575	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2815576	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2815577	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2999980	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4417171	0.82[ASN][1000 genomes]
rs5024546	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv3368825	chr10:27864181-28043820	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27982400-27988800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr10:27984400-27990800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr10:27984400-27990800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr10:27984600-27989200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr10:27985400-27990800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr10:27985800-27990800	Weak transcription	Osteobl	bone
7	chr10:27985800-28001400	Weak transcription	Aorta	Aorta
8	chr10:27986800-27989400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr10:27987200-27989600	Enhancers	Fetal Stomach	stomach
10	chr10:27987400-27990800	Weak transcription	Fetal Muscle Leg	muscle
11	chr10:27988200-27990400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr10:27988400-27988800	Enhancers	Fetal Brain Female	brain
13	chr10:27988400-27988800	Flanking Active TSS	NHDF-Ad	bronchial
14	chr10:27988400-27989000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:27988400-27989600	Enhancers	Adipose Nuclei	Adipose
16	chr10:27988400-27989800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr10:27988600-27989000	Active TSS	Ovary	ovary
18	chr10:27988600-27989200	Enhancers	Colon Smooth Muscle	Colon
19	chr10:27988600-27989200	Enhancers	HepG2	liver
20	chr10:27988600-27989600	Enhancers	Liver	Liver
21	chr10:27988600-27989600	Enhancers	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links