Variant report

Variant	rs2637327
Chromosome Location	chr10:27978845-27978846
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1907376	0.85[EUR][1000 genomes]
rs1907386	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1907390	0.93[EUR][1000 genomes]
rs1907391	0.93[EUR][1000 genomes]
rs1907392	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2246903	0.91[EUR][1000 genomes]
rs2252651	0.89[EUR][1000 genomes]
rs2451915	0.93[EUR][1000 genomes]
rs2451916	0.93[EUR][1000 genomes]
rs2451917	0.93[EUR][1000 genomes]
rs2451919	0.88[EUR][1000 genomes]
rs2451920	0.87[EUR][1000 genomes]
rs2492911	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2492912	0.93[EUR][1000 genomes]
rs2492913	0.88[EUR][1000 genomes]
rs2492914	0.88[EUR][1000 genomes]
rs2492915	0.89[EUR][1000 genomes]
rs2492916	0.88[EUR][1000 genomes]
rs2492917	0.87[EUR][1000 genomes]
rs2637293	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2637297	0.90[EUR][1000 genomes]
rs2637303	0.93[EUR][1000 genomes]
rs2637304	0.93[EUR][1000 genomes]
rs2637314	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2637315	0.83[ASN][1000 genomes]
rs2637328	0.90[EUR][1000 genomes]
rs2815477	0.87[EUR][1000 genomes]
rs2815478	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2815479	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2815559	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2815560	0.93[EUR][1000 genomes]
rs2815561	0.93[EUR][1000 genomes]
rs2815562	0.93[EUR][1000 genomes]
rs2815563	0.81[EUR][1000 genomes]
rs2815564	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2815565	0.93[EUR][1000 genomes]
rs2815566	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2815567	0.81[EUR][1000 genomes]
rs2815569	0.88[EUR][1000 genomes]
rs2815570	0.88[EUR][1000 genomes]
rs2815571	0.88[EUR][1000 genomes]
rs2815573	0.88[EUR][1000 genomes]
rs2815574	0.86[EUR][1000 genomes]
rs2815575	0.86[EUR][1000 genomes]
rs2815576	0.86[EUR][1000 genomes]
rs2815577	0.85[EUR][1000 genomes]
rs2999980	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv3368825	chr10:27864181-28043820	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27971600-27981600	Weak transcription	Colon Smooth Muscle	Colon
2	chr10:27973000-27981400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr10:27977000-27981800	Weak transcription	Ovary	ovary
4	chr10:27977800-27981600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr10:27977800-27981600	Weak transcription	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links