Variant report

Variant	rs2815563
Chromosome Location	chr10:27979247-27979248
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11015956	0.90[ASN][1000 genomes]
rs12217587	0.96[ASN][1000 genomes]
rs12217663	0.89[ASN][1000 genomes]
rs12257885	0.90[ASN][1000 genomes]
rs1907390	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1907391	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2246903	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2451915	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2451916	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2451917	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2451919	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2451920	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2492911	0.80[EUR][1000 genomes]
rs2492912	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2492913	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2492914	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2492915	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2492916	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2492917	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2637303	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2637304	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2637327	0.81[EUR][1000 genomes]
rs2637328	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2815559	0.80[EUR][1000 genomes]
rs2815560	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2815561	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2815562	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2815564	0.81[EUR][1000 genomes]
rs2815565	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2815567	0.81[ASN][1000 genomes]
rs2815569	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2815570	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2815571	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2815573	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2815574	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2815575	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2815576	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2815577	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2999980	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs5024546	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv3368825	chr10:27864181-28043820	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27971600-27981600	Weak transcription	Colon Smooth Muscle	Colon
2	chr10:27973000-27981400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr10:27977000-27981800	Weak transcription	Ovary	ovary
4	chr10:27977800-27981600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr10:27977800-27981600	Weak transcription	Fetal Heart	heart

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