Variant report

Variant	rs12257885
Chromosome Location	chr10:27997530-27997531
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27997284..27999257-chr10:28002507..28005191,2	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10826347	0.82[EUR][1000 genomes]
rs10826348	0.80[EUR][1000 genomes]
rs10829311	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11006695	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11006701	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11006706	0.82[EUR][1000 genomes]
rs11015956	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11015959	0.87[EUR][1000 genomes]
rs11015961	0.82[EUR][1000 genomes]
rs11015964	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11015965	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11015966	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12217587	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12217663	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12258832	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1907374	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1907390	0.94[ASN][1000 genomes]
rs1907391	0.94[ASN][1000 genomes]
rs2246903	0.94[ASN][1000 genomes]
rs2368249	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2368250	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2451915	0.94[ASN][1000 genomes]
rs2451916	0.94[ASN][1000 genomes]
rs2451917	0.94[ASN][1000 genomes]
rs2451919	0.93[ASN][1000 genomes]
rs2451920	0.94[ASN][1000 genomes]
rs2492912	0.94[ASN][1000 genomes]
rs2492913	0.94[ASN][1000 genomes]
rs2492914	0.94[ASN][1000 genomes]
rs2492915	0.94[ASN][1000 genomes]
rs2492916	0.94[ASN][1000 genomes]
rs2492917	0.93[ASN][1000 genomes]
rs2637303	0.94[ASN][1000 genomes]
rs2637304	0.93[ASN][1000 genomes]
rs2637328	0.94[ASN][1000 genomes]
rs2815560	0.94[ASN][1000 genomes]
rs2815561	0.94[ASN][1000 genomes]
rs2815562	0.94[ASN][1000 genomes]
rs2815563	0.90[ASN][1000 genomes]
rs2815565	0.94[ASN][1000 genomes]
rs2815569	0.94[ASN][1000 genomes]
rs2815570	0.94[ASN][1000 genomes]
rs2815571	0.94[ASN][1000 genomes]
rs2815573	0.94[ASN][1000 genomes]
rs2815574	0.97[ASN][1000 genomes]
rs2815575	0.97[ASN][1000 genomes]
rs2815576	0.97[ASN][1000 genomes]
rs2815577	0.97[ASN][1000 genomes]
rs2999980	0.91[ASN][1000 genomes]
rs4417171	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5024546	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72799605	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72799619	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv3368825	chr10:27864181-28043820	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27985800-28001400	Weak transcription	Aorta	Aorta
2	chr10:27992000-28001400	Weak transcription	Ovary	ovary
3	chr10:27992200-28001600	Weak transcription	Stomach Smooth Muscle	stomach

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