Variant report

Variant	rs11006706
Chromosome Location	chr10:28050840-28050841
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:28050679..28052378-chr10:28055717..28058202,2	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10826347	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10826348	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10829311	1.00[CEU][hapmap];0.86[GIH][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs11006695	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs11006701	0.88[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs11015956	0.86[CEU][hapmap]
rs11015961	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs11015964	1.00[CEU][hapmap];0.90[GIH][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs11015965	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs11015966	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs1112962	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12217587	0.93[CEU][hapmap];0.91[TSI][hapmap]
rs12217663	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs12257885	0.82[EUR][1000 genomes]
rs12258832	0.90[EUR][1000 genomes]
rs16928202	0.93[CEU][hapmap]
rs1907374	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs1907386	0.82[CEU][hapmap]
rs2246842	0.82[CEU][hapmap];0.81[GIH][hapmap];0.82[MEX][hapmap]
rs2368249	0.87[EUR][1000 genomes]
rs2368250	0.87[EUR][1000 genomes]
rs2637290	0.82[CEU][hapmap]
rs2637291	0.81[CEU][hapmap];0.90[JPT][hapmap]
rs2637293	0.82[CEU][hapmap]
rs2637297	0.82[CEU][hapmap]
rs2637320	0.82[CEU][hapmap]
rs2637321	0.82[CEU][hapmap]
rs2637323	0.82[CEU][hapmap]
rs2637324	0.82[CEU][hapmap]
rs2782339	0.82[CEU][hapmap]
rs2782341	0.86[CEU][hapmap]
rs2782343	0.82[CEU][hapmap];0.85[JPT][hapmap];0.82[MEX][hapmap]
rs2815477	0.82[CEU][hapmap]
rs2815478	0.82[CEU][hapmap]
rs2815479	0.82[CEU][hapmap]
rs2815482	0.82[CEU][hapmap];0.84[JPT][hapmap]
rs2815483	0.81[CEU][hapmap];0.82[JPT][hapmap]
rs2815484	0.82[CEU][hapmap];0.85[JPT][hapmap]
rs2815485	0.82[CEU][hapmap];0.85[JPT][hapmap]
rs2815488	0.82[CEU][hapmap]
rs2815493	0.82[CEU][hapmap]
rs4417171	1.00[CEU][hapmap];0.90[GIH][hapmap];0.87[MKK][hapmap];0.92[TSI][hapmap];0.90[EUR][1000 genomes]
rs5024546	0.86[CEU][hapmap];0.90[GIH][hapmap];0.83[TSI][hapmap]
rs72799605	0.90[EUR][1000 genomes]
rs72799619	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831813	chr10:28017606-28200651	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11006706	KIAA1462	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28035800-28063200	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links