Variant report

Variant	rs2815477
Chromosome Location	chr10:28003559-28003560
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27997284..27999257-chr10:28002507..28005191,2	K562	blood:

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10763622	0.82[TSI][hapmap]
rs10826347	0.82[CEU][hapmap]
rs10829311	0.82[CEU][hapmap]
rs11006695	0.82[CEU][hapmap]
rs11015959	0.87[ASN][1000 genomes]
rs11015961	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11015964	0.82[CEU][hapmap]
rs11015965	0.82[CEU][hapmap]
rs11015966	0.82[CEU][hapmap]
rs16928202	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1907374	0.82[CEU][hapmap]
rs1907376	0.92[EUR][1000 genomes]
rs1907386	1.00[CEU][hapmap];0.91[JPT][hapmap];0.88[YRI][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1907390	0.94[CEU][hapmap];0.85[EUR][1000 genomes]
rs1907391	0.85[EUR][1000 genomes]
rs1907392	0.88[ASW][hapmap];0.88[CEU][hapmap];0.98[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.91[EUR][1000 genomes]
rs1931888	0.82[TSI][hapmap]
rs2246842	1.00[CEU][hapmap];0.95[TSI][hapmap]
rs2246903	0.83[EUR][1000 genomes]
rs2252651	0.97[EUR][1000 genomes]
rs2451915	0.85[EUR][1000 genomes]
rs2451916	0.85[EUR][1000 genomes]
rs2451917	0.94[CEU][hapmap];0.85[EUR][1000 genomes]
rs2451919	0.85[EUR][1000 genomes]
rs2451920	0.87[EUR][1000 genomes]
rs2492911	0.94[CEU][hapmap];0.91[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes]
rs2492912	0.94[CEU][hapmap];0.91[TSI][hapmap];0.85[EUR][1000 genomes]
rs2492913	0.85[EUR][1000 genomes]
rs2492914	0.88[CEU][hapmap];0.91[TSI][hapmap];0.85[EUR][1000 genomes]
rs2492915	0.85[EUR][1000 genomes]
rs2492916	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs2492917	0.87[EUR][1000 genomes]
rs2637290	1.00[CEU][hapmap];0.91[TSI][hapmap];0.81[EUR][1000 genomes]
rs2637291	1.00[CEU][hapmap]
rs2637293	1.00[CEU][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.95[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2637297	1.00[CEU][hapmap];0.91[JPT][hapmap];0.98[EUR][1000 genomes]
rs2637303	0.94[CEU][hapmap];0.91[TSI][hapmap];0.85[EUR][1000 genomes]
rs2637304	0.85[EUR][1000 genomes]
rs2637314	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2637320	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2637321	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2637322	0.83[EUR][1000 genomes]
rs2637323	1.00[CEU][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs2637324	1.00[CEU][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs2637327	0.87[EUR][1000 genomes]
rs2637328	0.82[EUR][1000 genomes]
rs2637333	0.82[EUR][1000 genomes]
rs2782339	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs2782340	0.83[EUR][1000 genomes]
rs2782341	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs2782342	0.83[EUR][1000 genomes]
rs2782343	1.00[CEU][hapmap];0.95[TSI][hapmap]
rs2815478	1.00[CEU][hapmap];0.90[JPT][hapmap];0.98[EUR][1000 genomes]
rs2815479	1.00[CEU][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs2815482	1.00[CEU][hapmap]
rs2815483	1.00[CEU][hapmap]
rs2815484	1.00[CEU][hapmap]
rs2815485	1.00[CEU][hapmap]
rs2815488	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs2815489	0.83[EUR][1000 genomes]
rs2815491	0.83[EUR][1000 genomes]
rs2815493	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs2815494	0.81[EUR][1000 genomes]
rs2815559	0.94[CEU][hapmap];0.90[JPT][hapmap];0.86[EUR][1000 genomes]
rs2815560	0.94[CEU][hapmap];0.91[TSI][hapmap];0.85[EUR][1000 genomes]
rs2815561	0.94[CEU][hapmap];0.91[TSI][hapmap];0.85[EUR][1000 genomes]
rs2815562	0.85[EUR][1000 genomes]
rs2815564	0.94[CEU][hapmap];0.86[GIH][hapmap];0.86[JPT][hapmap];0.95[MEX][hapmap];0.87[TSI][hapmap];0.87[EUR][1000 genomes]
rs2815565	0.85[EUR][1000 genomes]
rs2815569	0.88[CEU][hapmap];0.91[TSI][hapmap];0.85[EUR][1000 genomes]
rs2815570	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs2815571	0.85[EUR][1000 genomes]
rs2815573	0.88[CEU][hapmap];0.91[TSI][hapmap];0.85[EUR][1000 genomes]
rs2815574	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs2815575	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs2815576	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs2815577	0.88[CEU][hapmap];0.87[EUR][1000 genomes]
rs2999980	0.88[CEU][hapmap];0.91[TSI][hapmap];0.85[EUR][1000 genomes]
rs4417171	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv3368825	chr10:27864181-28043820	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27999600-28004000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr10:28001400-28003800	Weak transcription	Psoas Muscle	Psoas
3	chr10:28001800-28003800	Weak transcription	Ovary	ovary
4	chr10:28002600-28003800	Weak transcription	Fetal Muscle Leg	muscle
5	chr10:28002600-28004800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:28002800-28003600	Active TSS	Stomach Smooth Muscle	stomach
7	chr10:28002800-28003600	Active TSS	HSMMtube	muscle
8	chr10:28002800-28004000	Enhancers	HSMM	muscle
9	chr10:28002800-28004400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr10:28002800-28004600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr10:28003000-28003600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr10:28003000-28003600	Active TSS	NHDF-Ad	bronchial
13	chr10:28003000-28003800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr10:28003000-28003800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr10:28003000-28004000	Flanking Active TSS	Osteobl	bone
16	chr10:28003000-28004800	Enhancers	Left Ventricle	heart
17	chr10:28003200-28003600	Active TSS	Muscle Satellite Cultured Cells	--
18	chr10:28003200-28003600	Active TSS	Aorta	Aorta
19	chr10:28003200-28003600	Active TSS	Monocytes-CD14+_RO01746	blood
20	chr10:28003400-28003600	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr10:28003400-28004000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr10:28003400-28004000	Enhancers	Fetal Kidney	kidney
23	chr10:28003400-28004200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr10:28003400-28005200	Enhancers	Skeletal Muscle Female	skeletal muscle

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