Variant report

Variant	rs2782339
Chromosome Location	chr10:28077443-28077444
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs10826347	0.82[CEU][hapmap]
rs10829311	0.82[CEU][hapmap]
rs11006695	0.82[CEU][hapmap]
rs11015961	0.82[CEU][hapmap]
rs11015964	0.82[CEU][hapmap]
rs11015965	0.82[CEU][hapmap]
rs11015966	0.82[CEU][hapmap]
rs12357953	1.00[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs12773654	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1334718	0.92[EUR][1000 genomes]
rs1907374	0.82[CEU][hapmap]
rs1907376	0.80[EUR][1000 genomes]
rs1907386	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs1907390	0.94[CEU][hapmap]
rs1907392	0.88[CEU][hapmap]
rs1907396	0.94[EUR][1000 genomes]
rs2246842	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2251454	0.93[EUR][1000 genomes]
rs2252651	0.84[EUR][1000 genomes]
rs2451917	0.94[CEU][hapmap]
rs2451925	0.94[EUR][1000 genomes]
rs2451927	0.94[EUR][1000 genomes]
rs2492903	0.94[EUR][1000 genomes]
rs2492904	0.94[EUR][1000 genomes]
rs2492906	0.89[ASN][1000 genomes]
rs2492911	0.94[CEU][hapmap]
rs2492912	0.94[CEU][hapmap]
rs2492914	0.88[CEU][hapmap]
rs2492916	0.88[CEU][hapmap]
rs2637287	0.94[EUR][1000 genomes]
rs2637288	0.94[EUR][1000 genomes]
rs2637289	0.94[EUR][1000 genomes]
rs2637290	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2637291	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2637293	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2637297	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2637303	0.94[CEU][hapmap]
rs2637320	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2637321	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2637322	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2637323	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2637324	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2637325	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2637333	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2782332	0.88[ASN][1000 genomes]
rs2782333	0.90[ASN][1000 genomes]
rs2782334	0.82[EUR][1000 genomes]
rs2782335	0.90[EUR][1000 genomes]
rs2782336	0.90[EUR][1000 genomes]
rs2782338	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2782340	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2782341	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2782342	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2782343	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2815477	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs2815478	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2815479	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2815482	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2815483	1.00[CEU][hapmap]
rs2815484	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2815485	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2815486	0.94[EUR][1000 genomes]
rs2815487	0.94[EUR][1000 genomes]
rs2815488	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2815489	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2815490	0.94[EUR][1000 genomes]
rs2815491	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2815493	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2815494	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2815497	0.93[EUR][1000 genomes]
rs2815498	0.93[EUR][1000 genomes]
rs2815499	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2815502	0.90[EUR][1000 genomes]
rs2815503	0.90[EUR][1000 genomes]
rs2815504	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2815559	0.94[CEU][hapmap]
rs2815560	0.94[CEU][hapmap]
rs2815561	0.94[CEU][hapmap]
rs2815564	0.94[CEU][hapmap]
rs2815569	0.88[CEU][hapmap]
rs2815570	0.88[CEU][hapmap]
rs2815573	0.88[CEU][hapmap]
rs2815574	0.88[CEU][hapmap]
rs2815575	0.88[CEU][hapmap]
rs2815576	0.88[CEU][hapmap]
rs2815577	0.88[CEU][hapmap]
rs2991934	0.90[ASN][1000 genomes]
rs2991935	1.00[CHB][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs2999978	0.90[ASN][1000 genomes]
rs2999980	0.88[CEU][hapmap]
rs35267408	0.85[ASN][1000 genomes]
rs4417171	0.82[CEU][hapmap]
rs4749261	1.00[CHB][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs7081305	1.00[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831813	chr10:28017606-28200651	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv971859	chr10:28070066-28271252	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28074000-28080200	Weak transcription	Aorta	Aorta
2	chr10:28077400-28078000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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