Variant report

Variant	rs2637288
Chromosome Location	chr10:28048733-28048734
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr10:28048386-28048805	MCF-7	breast:	n/a	n/a
2	CTCF	chr10:28048597-28048738	GM12878	blood:	n/a	n/a
3	TCF12	chr10:28048571-28049386	ECC-1	luminal epithelium:	n/a	chr10:28048896-28048906
4	RAD21	chr10:28048304-28049017	HCT-116	colon:	n/a	n/a
5	RAD21	chr10:28048318-28048929	HCT-116	colon:	n/a	n/a
6	RAD21	chr10:28048449-28048781	Hela-S3	cervix:	n/a	n/a
7	TCF12	chr10:28048632-28049456	ECC-1	luminal epithelium:	n/a	chr10:28048896-28048906
8	CTCF	chr10:28048473-28048741	MCF-7	breast:	n/a	n/a
9	CTCF	chr10:28048434-28048835	HCT-116	colon:	n/a	n/a
10	CTCF	chr10:28048600-28048750	AG10803	skin:	n/a	n/a
11	CTCF	chr10:28048461-28048733	IMR90	lung:	n/a	n/a
12	EP300	chr10:28048572-28049414	ECC-1	luminal epithelium:	n/a	chr10:28048734-28048748
13	RAD21	chr10:28048444-28048771	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
ENSG00000230500	TF binding region

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10763622	0.84[EUR][1000 genomes]
rs1334718	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1907386	0.81[EUR][1000 genomes]
rs1907396	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1931888	0.84[EUR][1000 genomes]
rs2246842	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2251454	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2252651	0.81[EUR][1000 genomes]
rs2451925	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2451927	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2492903	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2492904	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2637287	0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2637289	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2637290	0.94[EUR][1000 genomes]
rs2637291	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2637293	0.81[EUR][1000 genomes]
rs2637297	0.81[EUR][1000 genomes]
rs2637320	0.95[EUR][1000 genomes]
rs2637321	0.94[EUR][1000 genomes]
rs2637322	0.94[EUR][1000 genomes]
rs2637323	0.94[EUR][1000 genomes]
rs2637324	0.94[EUR][1000 genomes]
rs2637325	0.87[EUR][1000 genomes]
rs2637333	0.94[EUR][1000 genomes]
rs2782334	0.87[EUR][1000 genomes]
rs2782335	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2782336	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2782338	0.93[EUR][1000 genomes]
rs2782339	0.94[EUR][1000 genomes]
rs2782340	0.94[EUR][1000 genomes]
rs2782341	0.94[EUR][1000 genomes]
rs2782342	0.94[EUR][1000 genomes]
rs2782343	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2815478	0.81[EUR][1000 genomes]
rs2815479	0.81[EUR][1000 genomes]
rs2815482	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2815484	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2815485	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2815486	0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2815487	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2815488	0.94[EUR][1000 genomes]
rs2815489	0.94[EUR][1000 genomes]
rs2815490	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2815491	0.94[EUR][1000 genomes]
rs2815493	0.94[EUR][1000 genomes]
rs2815494	0.92[EUR][1000 genomes]
rs2815497	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2815498	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2815499	0.93[EUR][1000 genomes]
rs2815502	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2815503	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2815504	0.81[EUR][1000 genomes]
rs2815506	0.82[EUR][1000 genomes]
rs6481483	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831813	chr10:28017606-28200651	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28035800-28063200	Weak transcription	Aorta	Aorta
2	chr10:28048600-28049000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:28048600-28049200	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:28048600-28049200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr10:28048600-28049200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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