Variant report

Variant	rs2637293
Chromosome Location	chr10:28006090-28006091
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:28000067..28003479-chr10:28003603..28008037,4	K562	blood:

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10763622	0.82[TSI][hapmap]
rs10826347	0.82[CEU][hapmap]
rs10829311	0.82[CEU][hapmap]
rs11006695	0.82[CEU][hapmap]
rs11015961	0.82[CEU][hapmap];0.91[JPT][hapmap]
rs11015964	0.82[CEU][hapmap]
rs11015965	0.82[CEU][hapmap]
rs11015966	0.82[CEU][hapmap]
rs16928202	0.91[JPT][hapmap]
rs1907374	0.82[CEU][hapmap]
rs1907376	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1907386	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1907390	0.94[CEU][hapmap];0.83[EUR][1000 genomes]
rs1907391	0.83[EUR][1000 genomes]
rs1907392	0.88[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1907396	0.81[EUR][1000 genomes]
rs1931888	0.82[TSI][hapmap]
rs2246842	1.00[CEU][hapmap];0.95[TSI][hapmap];0.81[EUR][1000 genomes]
rs2246903	0.81[EUR][1000 genomes]
rs2252651	0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2451915	0.83[EUR][1000 genomes]
rs2451916	0.83[EUR][1000 genomes]
rs2451917	0.94[CEU][hapmap];0.83[EUR][1000 genomes]
rs2451919	0.83[EUR][1000 genomes]
rs2451920	0.85[EUR][1000 genomes]
rs2451925	0.81[EUR][1000 genomes]
rs2451927	0.81[EUR][1000 genomes]
rs2492903	0.81[EUR][1000 genomes]
rs2492904	0.81[EUR][1000 genomes]
rs2492911	0.94[CEU][hapmap];0.91[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2492912	0.94[CEU][hapmap];0.91[TSI][hapmap];0.83[EUR][1000 genomes]
rs2492913	0.83[EUR][1000 genomes]
rs2492914	0.88[CEU][hapmap];0.91[TSI][hapmap];0.83[EUR][1000 genomes]
rs2492915	0.83[EUR][1000 genomes]
rs2492916	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs2492917	0.85[EUR][1000 genomes]
rs2637287	0.80[EUR][1000 genomes]
rs2637288	0.81[EUR][1000 genomes]
rs2637289	0.81[EUR][1000 genomes]
rs2637290	1.00[CEU][hapmap];0.91[TSI][hapmap];0.84[EUR][1000 genomes]
rs2637291	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs2637297	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2637303	0.94[CEU][hapmap];0.91[TSI][hapmap];0.83[EUR][1000 genomes]
rs2637304	0.83[EUR][1000 genomes]
rs2637314	0.83[EUR][1000 genomes]
rs2637320	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs2637321	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs2637322	0.85[EUR][1000 genomes]
rs2637323	1.00[CEU][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs2637324	1.00[CEU][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs2637327	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2637328	0.80[EUR][1000 genomes]
rs2637333	0.84[EUR][1000 genomes]
rs2782338	0.82[EUR][1000 genomes]
rs2782339	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2782340	0.85[EUR][1000 genomes]
rs2782341	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2782342	0.85[EUR][1000 genomes]
rs2782343	1.00[CEU][hapmap];0.95[TSI][hapmap];0.80[EUR][1000 genomes]
rs2815477	1.00[CEU][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.95[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2815478	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2815479	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.81[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2815482	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs2815483	1.00[CEU][hapmap]
rs2815484	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs2815485	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs2815486	0.80[EUR][1000 genomes]
rs2815487	0.81[EUR][1000 genomes]
rs2815488	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2815489	0.85[EUR][1000 genomes]
rs2815490	0.81[EUR][1000 genomes]
rs2815491	0.85[EUR][1000 genomes]
rs2815493	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2815494	0.83[EUR][1000 genomes]
rs2815499	0.82[EUR][1000 genomes]
rs2815559	0.94[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2815560	0.94[CEU][hapmap];0.91[TSI][hapmap];0.83[EUR][1000 genomes]
rs2815561	0.94[CEU][hapmap];0.91[TSI][hapmap];0.83[EUR][1000 genomes]
rs2815562	0.83[EUR][1000 genomes]
rs2815564	0.94[CEU][hapmap];0.91[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];0.95[JPT][hapmap];0.89[MEX][hapmap];0.87[TSI][hapmap];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2815565	0.83[EUR][1000 genomes]
rs2815566	0.82[EUR][1000 genomes]
rs2815569	0.88[CEU][hapmap];0.91[TSI][hapmap];0.83[EUR][1000 genomes]
rs2815570	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs2815571	0.83[EUR][1000 genomes]
rs2815573	0.88[CEU][hapmap];0.91[TSI][hapmap];0.83[EUR][1000 genomes]
rs2815574	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs2815575	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs2815576	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs2815577	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs2999980	0.88[CEU][hapmap];0.91[TSI][hapmap];0.83[EUR][1000 genomes]
rs4417171	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv3368825	chr10:27864181-28043820	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28004000-28006800	Enhancers	Osteobl	bone
2	chr10:28004000-28007000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr10:28004400-28006600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr10:28004600-28006200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr10:28004800-28006400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:28004800-28011200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr10:28004800-28011400	Weak transcription	Ovary	ovary
8	chr10:28004800-28014800	Weak transcription	Aorta	Aorta
9	chr10:28005000-28006600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr10:28005800-28007000	Enhancers	NHDF-Ad	bronchial
11	chr10:28006000-28006200	Bivalent Enhancer	Fetal Brain Male	brain
12	chr10:28006000-28006200	Enhancers	Psoas Muscle	Psoas
13	chr10:28006000-28006200	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr10:28006000-28007400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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