Variant report

Variant	rs2451920
Chromosome Location	chr10:27990117-27990118
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10829311	0.82[ASN][1000 genomes]
rs11015956	0.94[ASN][1000 genomes]
rs11015964	0.82[ASN][1000 genomes]
rs11015965	0.82[ASN][1000 genomes]
rs11015966	0.82[ASN][1000 genomes]
rs12217587	1.00[ASN][1000 genomes]
rs12217663	0.93[ASN][1000 genomes]
rs12257885	0.94[ASN][1000 genomes]
rs12258832	0.82[ASN][1000 genomes]
rs1907376	0.80[EUR][1000 genomes]
rs1907386	0.85[EUR][1000 genomes]
rs1907390	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1907391	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1907392	0.91[EUR][1000 genomes]
rs2246903	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2252651	0.84[EUR][1000 genomes]
rs2451915	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2451916	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2451917	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2451919	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2492911	0.88[EUR][1000 genomes]
rs2492912	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2492913	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2492914	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2492915	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2492916	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2492917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2637293	0.85[EUR][1000 genomes]
rs2637297	0.85[EUR][1000 genomes]
rs2637303	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2637304	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2637314	0.88[EUR][1000 genomes]
rs2637327	0.87[EUR][1000 genomes]
rs2637328	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2815477	0.87[EUR][1000 genomes]
rs2815478	0.85[EUR][1000 genomes]
rs2815479	0.85[EUR][1000 genomes]
rs2815559	0.86[EUR][1000 genomes]
rs2815560	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2815561	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2815562	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2815563	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2815564	0.87[EUR][1000 genomes]
rs2815565	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2815566	0.82[EUR][1000 genomes]
rs2815567	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2815569	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2815570	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2815571	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2815573	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2815574	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2815575	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2815576	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2815577	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2999980	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4417171	0.82[ASN][1000 genomes]
rs5024546	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv3368825	chr10:27864181-28043820	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	esv3430719	chr10:27989546-27991744	Weak transcription Enhancers Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
4	esv3404415	chr10:27990046-27991294	Enhancers Flanking Active TSS Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27984400-27990800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr10:27984400-27990800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr10:27985400-27990800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr10:27985800-27990800	Weak transcription	Osteobl	bone
5	chr10:27985800-28001400	Weak transcription	Aorta	Aorta
6	chr10:27987400-27990800	Weak transcription	Fetal Muscle Leg	muscle
7	chr10:27988200-27990400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:27988800-27991000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr10:27988800-27991400	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr10:27988800-27992000	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr10:27989000-27990800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr10:27989000-27991000	Weak transcription	Ovary	ovary
13	chr10:27989200-27990400	Weak transcription	Colon Smooth Muscle	Colon
14	chr10:27989200-27991600	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr10:27989400-27991400	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr10:27989400-27991400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr10:27989400-27991600	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr10:27989600-27990800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr10:27989600-27990800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr10:27989600-27990800	Weak transcription	Fetal Stomach	stomach
21	chr10:27989600-27990800	Weak transcription	Stomach Smooth Muscle	stomach
22	chr10:27989600-27991000	Weak transcription	NHDF-Ad	bronchial
23	chr10:27989600-27991600	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr10:27989800-27990800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr10:27990000-27990600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr10:27990000-27991200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links