Variant report

Variant	rs1907376
Chromosome Location	chr10:28030094-28030095
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr10:28029911-28030690	H1-hESC	embryonic stem cell:	n/a	n/a
2	TCF12	chr10:28029923-28030298	H1-hESC	embryonic stem cell:	n/a	n/a
3	MXI1	chr10:28029914-28030258	H1-hESC	embryonic stem cell:	n/a	chr10:28030183-28030192
4	ZNF143	chr10:28029980-28030344	H1-hESC	embryonic stem cell:	n/a	n/a
5	MAX	chr10:28029880-28031450	H1-hESC	embryonic stem cell:	n/a	chr10:28031404-28031413
6	BACH1	chr10:28029941-28030402	H1-hESC	embryonic stem cell:	n/a	n/a
7	TEAD4	chr10:28029869-28030258	H1-hESC	embryonic stem cell:	n/a	n/a
8	MAX	chr10:28029755-28031448	H1-hESC	embryonic stem cell:	n/a	chr10:28031404-28031413
9	MAX	chr10:28030028-28030336	K562	blood:	n/a	n/a
10	TBP	chr10:28030043-28030627	H1-hESC	embryonic stem cell:	n/a	n/a
11	E2F6	chr10:28029879-28031338	H1-hESC	embryonic stem cell:	n/a	chr10:28030232-28030246 chr10:28030776-28030786 chr10:28030235-28030242 chr10:28030235-28030242 chr10:28030235-28030242 chr10:28031268-28031277
12	SIN3A	chr10:28029747-28030420	H1-hESC	embryonic stem cell:	n/a	n/a
13	CTBP2	chr10:28029973-28035811	H1-hESC	embryonic stem cell:	n/a	n/a
14	GTF2F1	chr10:28029847-28030390	H1-hESC	embryonic stem cell:	n/a	n/a
15	E2F6	chr10:28029638-28031447	H1-hESC	embryonic stem cell:	n/a	chr10:28030232-28030246 chr10:28030776-28030786 chr10:28030235-28030242 chr10:28030235-28030242 chr10:28030235-28030242 chr10:28031268-28031277
16	TEAD4	chr10:28029996-28030714	H1-hESC	embryonic stem cell:	n/a	n/a
17	MYC	chr10:28029946-28030382	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
ENSG00000230500	TF binding region

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1907386	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1907392	0.88[EUR][1000 genomes]
rs2252651	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2451920	0.80[EUR][1000 genomes]
rs2492911	0.85[EUR][1000 genomes]
rs2492917	0.80[EUR][1000 genomes]
rs2637290	0.80[EUR][1000 genomes]
rs2637293	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2637297	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2637321	0.81[EUR][1000 genomes]
rs2637322	0.80[EUR][1000 genomes]
rs2637323	0.80[EUR][1000 genomes]
rs2637324	0.80[EUR][1000 genomes]
rs2637327	0.85[EUR][1000 genomes]
rs2637333	0.81[EUR][1000 genomes]
rs2782339	0.80[EUR][1000 genomes]
rs2782340	0.80[EUR][1000 genomes]
rs2782341	0.80[EUR][1000 genomes]
rs2782342	0.80[EUR][1000 genomes]
rs2815477	0.92[EUR][1000 genomes]
rs2815478	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2815479	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2815488	0.80[EUR][1000 genomes]
rs2815489	0.80[EUR][1000 genomes]
rs2815491	0.80[EUR][1000 genomes]
rs2815493	0.80[EUR][1000 genomes]
rs2815559	0.84[EUR][1000 genomes]
rs2815564	0.85[EUR][1000 genomes]
rs2815574	0.81[EUR][1000 genomes]
rs2815575	0.81[EUR][1000 genomes]
rs2815576	0.81[EUR][1000 genomes]
rs2815577	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3368825	chr10:27864181-28043820	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv831813	chr10:28017606-28200651	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28018000-28030600	Weak transcription	Aorta	Aorta
2	chr10:28020600-28030600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr10:28026000-28030600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr10:28026200-28030600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr10:28026200-28030600	Weak transcription	Osteobl	bone
6	chr10:28026400-28030600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr10:28029800-28030200	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
8	chr10:28029800-28030200	Strong transcription	Ovary	ovary
9	chr10:28029800-28030400	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr10:28029800-28030400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
11	chr10:28029800-28031000	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
12	chr10:28029800-28032600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
13	chr10:28029800-28033200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
14	chr10:28029800-28035800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
15	chr10:28029800-28036000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
16	chr10:28030000-28030200	Bivalent Enhancer	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:28030000-28030200	Bivalent/Poised TSS	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr10:28030000-28030200	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
19	chr10:28030000-28030200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr10:28030000-28030200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr10:28030000-28030200	Genic enhancers	Stomach Smooth Muscle	stomach
22	chr10:28030000-28030400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells	blood
23	chr10:28030000-28030400	Bivalent Enhancer	Brain Germinal Matrix	brain
24	chr10:28030000-28030600	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
25	chr10:28030000-28030600	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
26	chr10:28030000-28030800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
27	chr10:28030000-28030800	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
28	chr10:28030000-28030800	Bivalent Enhancer	Duodenum Mucosa	Duodenum
29	chr10:28030000-28031200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
30	chr10:28030000-28032800	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr10:28030000-28033400	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr10:28030000-28033600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
33	chr10:28030000-28036600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell

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