Variant report

Variant	rs2815491
Chromosome Location	chr10:28064205-28064206
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10826347	0.82[CEU][hapmap]
rs10829311	0.82[CEU][hapmap]
rs11006695	0.82[CEU][hapmap]
rs11015961	0.82[CEU][hapmap]
rs11015964	0.82[CEU][hapmap]
rs11015965	0.82[CEU][hapmap]
rs11015966	0.82[CEU][hapmap]
rs12357953	1.00[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs12773654	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1334718	0.92[EUR][1000 genomes]
rs1907374	0.82[CEU][hapmap]
rs1907376	0.80[EUR][1000 genomes]
rs1907386	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs1907390	0.94[CEU][hapmap]
rs1907392	0.88[CEU][hapmap]
rs1907396	0.81[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs2246842	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2251454	0.93[EUR][1000 genomes]
rs2252651	0.84[EUR][1000 genomes]
rs2451917	0.94[CEU][hapmap]
rs2451925	0.94[EUR][1000 genomes]
rs2451927	0.94[EUR][1000 genomes]
rs2492903	0.94[EUR][1000 genomes]
rs2492904	0.94[EUR][1000 genomes]
rs2492906	0.83[ASN][1000 genomes]
rs2492911	0.94[CEU][hapmap]
rs2492912	0.94[CEU][hapmap]
rs2492914	0.88[CEU][hapmap]
rs2492916	0.88[CEU][hapmap]
rs2637287	0.94[EUR][1000 genomes]
rs2637288	0.94[EUR][1000 genomes]
rs2637289	0.94[EUR][1000 genomes]
rs2637290	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2637291	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2637293	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2637297	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2637303	0.94[CEU][hapmap]
rs2637320	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2637321	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2637322	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2637323	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2637324	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2637325	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2637333	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2782332	0.82[ASN][1000 genomes]
rs2782333	0.84[ASN][1000 genomes]
rs2782334	0.82[EUR][1000 genomes]
rs2782335	0.90[EUR][1000 genomes]
rs2782336	0.90[EUR][1000 genomes]
rs2782338	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2782339	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2782340	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2782341	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2782342	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2782343	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2815477	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs2815478	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2815479	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2815482	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2815483	1.00[CEU][hapmap]
rs2815484	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2815485	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2815486	0.94[EUR][1000 genomes]
rs2815487	0.94[EUR][1000 genomes]
rs2815488	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2815489	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2815490	0.94[EUR][1000 genomes]
rs2815493	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2815494	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2815497	0.93[EUR][1000 genomes]
rs2815498	0.93[EUR][1000 genomes]
rs2815499	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2815502	0.90[EUR][1000 genomes]
rs2815503	0.90[EUR][1000 genomes]
rs2815504	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2815559	0.94[CEU][hapmap]
rs2815560	0.94[CEU][hapmap]
rs2815561	0.94[CEU][hapmap]
rs2815564	0.94[CEU][hapmap]
rs2815569	0.88[CEU][hapmap]
rs2815570	0.88[CEU][hapmap]
rs2815573	0.88[CEU][hapmap]
rs2815574	0.88[CEU][hapmap]
rs2815575	0.88[CEU][hapmap]
rs2815576	0.88[CEU][hapmap]
rs2815577	0.88[CEU][hapmap]
rs2991934	0.84[ASN][1000 genomes]
rs2991935	1.00[CHB][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs2999978	0.84[ASN][1000 genomes]
rs2999980	0.88[CEU][hapmap]
rs4417171	0.82[CEU][hapmap]
rs4749261	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs7081305	1.00[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831813	chr10:28017606-28200651	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28063000-28064400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr10:28063000-28064400	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr10:28063200-28064400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr10:28063200-28064400	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr10:28064000-28064800	Weak transcription	H9 Cell Line	embryonic stem cell

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