Variant report

Variant	rs12773654
Chromosome Location	chr10:28103432-28103433
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10763622	0.93[EUR][1000 genomes]
rs12357953	0.93[ASN][1000 genomes]
rs1931888	0.93[EUR][1000 genomes]
rs2492906	0.93[ASN][1000 genomes]
rs2637290	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2637320	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2637321	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2637322	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2637323	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2637324	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2637325	0.83[ASN][1000 genomes]
rs2637333	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2782332	0.92[ASN][1000 genomes]
rs2782333	0.93[ASN][1000 genomes]
rs2782334	0.89[EUR][1000 genomes]
rs2782335	0.80[EUR][1000 genomes]
rs2782336	0.80[EUR][1000 genomes]
rs2782338	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2782339	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2782340	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2782341	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2782342	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2815488	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2815489	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2815491	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2815493	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2815494	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2815499	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2815502	0.80[EUR][1000 genomes]
rs2815503	0.80[EUR][1000 genomes]
rs2815504	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2815506	0.88[EUR][1000 genomes]
rs2991934	0.93[ASN][1000 genomes]
rs2991935	0.91[ASN][1000 genomes]
rs2999978	0.93[ASN][1000 genomes]
rs35267408	0.89[ASN][1000 genomes]
rs4749261	0.93[ASN][1000 genomes]
rs6481482	0.90[EUR][1000 genomes]
rs6481483	0.93[EUR][1000 genomes]
rs7081305	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831813	chr10:28017606-28200651	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv971859	chr10:28070066-28271252	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28100200-28104000	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr10:28101000-28108000	Weak transcription	Ovary	ovary

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