Variant report

Variant	rs1931888
Chromosome Location	chr10:28107057-28107058
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:28101558..28104290-chr10:28106943..28109516,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169126	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10763622	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10829311	0.83[JPT][hapmap]
rs11006695	0.81[JPT][hapmap]
rs11006736	0.95[CHB][hapmap];0.85[CHD][hapmap];0.93[LWK][hapmap];0.84[MKK][hapmap];0.81[YRI][hapmap];0.86[AFR][1000 genomes]
rs11015964	0.83[JPT][hapmap]
rs11015965	0.83[JPT][hapmap]
rs11015966	0.83[JPT][hapmap]
rs12355412	0.95[CHB][hapmap];0.81[YRI][hapmap];0.90[AFR][1000 genomes]
rs12355413	0.95[CHB][hapmap];0.87[CHD][hapmap];1.00[LWK][hapmap];0.84[MKK][hapmap];0.88[YRI][hapmap];0.90[AFR][1000 genomes]
rs12357953	0.81[CEU][hapmap];0.80[TSI][hapmap]
rs12773654	0.93[EUR][1000 genomes]
rs1334718	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1907396	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2246842	0.84[GIH][hapmap];0.86[TSI][hapmap];0.84[EUR][1000 genomes]
rs2251454	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2451925	0.84[EUR][1000 genomes]
rs2451927	0.84[EUR][1000 genomes]
rs2492903	0.84[EUR][1000 genomes]
rs2492904	0.84[EUR][1000 genomes]
rs2492912	0.81[TSI][hapmap]
rs2637287	0.83[EUR][1000 genomes]
rs2637288	0.84[EUR][1000 genomes]
rs2637289	0.84[EUR][1000 genomes]
rs2637290	0.82[TSI][hapmap]
rs2637291	0.81[CHB][hapmap];0.84[EUR][1000 genomes]
rs2637293	0.82[TSI][hapmap]
rs2637303	0.81[TSI][hapmap]
rs2637323	0.82[TSI][hapmap]
rs2637324	0.82[TSI][hapmap]
rs2782334	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2782335	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2782336	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2782338	0.80[EUR][1000 genomes]
rs2782343	0.95[CHB][hapmap];0.84[CHD][hapmap];0.85[GIH][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2815477	0.82[TSI][hapmap]
rs2815479	0.82[TSI][hapmap]
rs2815482	0.82[CHB][hapmap];0.84[EUR][1000 genomes]
rs2815483	0.80[CHB][hapmap]
rs2815484	0.82[CHB][hapmap];0.84[EUR][1000 genomes]
rs2815485	0.87[CHB][hapmap];0.84[EUR][1000 genomes]
rs2815486	0.83[EUR][1000 genomes]
rs2815487	0.84[EUR][1000 genomes]
rs2815490	0.84[EUR][1000 genomes]
rs2815497	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2815498	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2815499	0.80[EUR][1000 genomes]
rs2815502	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2815503	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2815504	0.91[EUR][1000 genomes]
rs2815506	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2815560	0.81[TSI][hapmap]
rs2815561	0.81[TSI][hapmap]
rs4749261	0.80[TSI][hapmap]
rs6481482	1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6481483	0.83[CEU][hapmap];0.85[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831813	chr10:28017606-28200651	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv971859	chr10:28070066-28271252	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28101000-28108000	Weak transcription	Ovary	ovary
2	chr10:28105600-28127600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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