Variant report

Variant	rs2815561
Chromosome Location	chr10:27978360-27978361
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10763622	0.81[TSI][hapmap]
rs10829311	0.90[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.81[MEX][hapmap];0.82[ASN][1000 genomes]
rs11006695	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs11015956	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11015964	0.90[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs11015965	0.90[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs11015966	0.94[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs12217587	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12217663	0.93[ASN][1000 genomes]
rs12257885	0.94[ASN][1000 genomes]
rs12258832	0.82[ASN][1000 genomes]
rs1907374	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs1907386	0.94[CEU][hapmap];0.83[EUR][1000 genomes]
rs1907390	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1907391	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1907392	0.94[CEU][hapmap];0.91[TSI][hapmap];0.85[EUR][1000 genomes]
rs1931888	0.81[TSI][hapmap]
rs2246842	0.94[CEU][hapmap];0.95[TSI][hapmap]
rs2246903	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2252651	0.82[EUR][1000 genomes]
rs2451915	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2451916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2451917	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2451919	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2451920	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2492911	1.00[CEU][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes]
rs2492912	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2492913	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2492914	0.94[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2492915	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2492916	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2492917	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2637290	0.94[CEU][hapmap];0.91[TSI][hapmap]
rs2637291	0.94[CEU][hapmap]
rs2637293	0.94[CEU][hapmap];0.91[TSI][hapmap];0.83[EUR][1000 genomes]
rs2637297	0.94[CEU][hapmap];0.83[EUR][1000 genomes]
rs2637303	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2637304	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2637314	0.97[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2637320	0.94[CEU][hapmap]
rs2637321	0.94[CEU][hapmap]
rs2637323	0.94[CEU][hapmap];0.91[TSI][hapmap]
rs2637324	0.94[CEU][hapmap];0.91[TSI][hapmap]
rs2637327	0.93[EUR][1000 genomes]
rs2637328	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2782339	0.94[CEU][hapmap]
rs2782341	0.93[CEU][hapmap]
rs2782343	0.94[CEU][hapmap];0.95[TSI][hapmap]
rs2815477	0.94[CEU][hapmap];0.91[TSI][hapmap];0.85[EUR][1000 genomes]
rs2815478	0.94[CEU][hapmap];0.83[EUR][1000 genomes]
rs2815479	0.94[CEU][hapmap];0.91[TSI][hapmap];0.83[EUR][1000 genomes]
rs2815482	0.94[CEU][hapmap]
rs2815483	0.94[CEU][hapmap]
rs2815484	0.94[CEU][hapmap]
rs2815485	0.94[CEU][hapmap]
rs2815488	0.94[CEU][hapmap]
rs2815493	0.94[CEU][hapmap]
rs2815559	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs2815560	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2815562	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2815563	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2815564	1.00[CEU][hapmap];0.95[TSI][hapmap];0.93[EUR][1000 genomes]
rs2815565	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2815566	0.85[EUR][1000 genomes]
rs2815567	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2815569	0.94[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2815570	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2815571	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2815573	0.94[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2815574	0.94[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2815575	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2815576	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2815577	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2999980	0.94[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.91[TSI][hapmap];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4417171	0.88[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs5024546	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv3368825	chr10:27864181-28043820	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27971600-27981600	Weak transcription	Colon Smooth Muscle	Colon
2	chr10:27973000-27981400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr10:27977000-27981800	Weak transcription	Ovary	ovary
4	chr10:27977800-27981600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr10:27977800-27981600	Weak transcription	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links