Variant report

Variant	rs10829311
Chromosome Location	chr10:28002156-28002157
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:28000067..28003479-chr10:28003603..28008037,4	K562	blood:
2	chr10:28000828..28003406-chr10:28003603..28005952,2	K562	blood:

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10763622	0.83[JPT][hapmap]
rs10826347	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs10826348	0.89[EUR][1000 genomes]
rs11006695	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11006701	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11006706	0.90[EUR][1000 genomes]
rs11015956	0.86[CEU][hapmap];0.88[CHB][hapmap];0.92[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11015959	0.86[EUR][1000 genomes]
rs11015961	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs11015964	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015965	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015966	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1112962	0.85[EUR][1000 genomes]
rs12217587	0.86[ASW][hapmap];0.93[CEU][hapmap];0.90[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.93[MEX][hapmap];0.91[TSI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12217663	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12257885	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12258832	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16928202	0.93[CEU][hapmap]
rs1907374	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1907386	0.82[CEU][hapmap]
rs1907390	0.90[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs1907391	0.82[ASN][1000 genomes]
rs1931888	0.83[JPT][hapmap]
rs2246842	0.82[CEU][hapmap]
rs2246903	0.82[ASN][1000 genomes]
rs2368249	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2368250	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2451915	0.82[ASN][1000 genomes]
rs2451916	0.82[ASN][1000 genomes]
rs2451917	0.84[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs2451919	0.80[ASN][1000 genomes]
rs2451920	0.82[ASN][1000 genomes]
rs2492912	0.90[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.86[MEX][hapmap];0.82[ASN][1000 genomes]
rs2492913	0.82[ASN][1000 genomes]
rs2492914	0.90[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.81[MEX][hapmap];0.82[ASN][1000 genomes]
rs2492915	0.82[ASN][1000 genomes]
rs2492916	0.85[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs2492917	0.80[ASN][1000 genomes]
rs2637290	0.82[CEU][hapmap]
rs2637291	0.81[CEU][hapmap]
rs2637293	0.82[CEU][hapmap]
rs2637297	0.82[CEU][hapmap]
rs2637303	0.90[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.86[MEX][hapmap];0.82[ASN][1000 genomes]
rs2637304	0.80[ASN][1000 genomes]
rs2637320	0.82[CEU][hapmap]
rs2637321	0.82[CEU][hapmap]
rs2637323	0.82[CEU][hapmap]
rs2637324	0.82[CEU][hapmap]
rs2637328	0.82[ASN][1000 genomes]
rs2782339	0.82[CEU][hapmap]
rs2782341	0.86[CEU][hapmap]
rs2782343	0.82[CEU][hapmap]
rs2815477	0.82[CEU][hapmap]
rs2815478	0.82[CEU][hapmap]
rs2815479	0.82[CEU][hapmap]
rs2815482	0.82[CEU][hapmap]
rs2815483	0.81[CEU][hapmap]
rs2815484	0.82[CEU][hapmap]
rs2815485	0.82[CEU][hapmap]
rs2815488	0.82[CEU][hapmap]
rs2815493	0.82[CEU][hapmap]
rs2815560	0.90[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.86[MEX][hapmap];0.82[ASN][1000 genomes]
rs2815561	0.90[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.81[MEX][hapmap];0.82[ASN][1000 genomes]
rs2815562	0.82[ASN][1000 genomes]
rs2815565	0.82[ASN][1000 genomes]
rs2815569	0.90[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.81[MEX][hapmap];0.82[ASN][1000 genomes]
rs2815570	0.85[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs2815571	0.82[ASN][1000 genomes]
rs2815573	0.94[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.81[MEX][hapmap];0.82[ASN][1000 genomes]
rs2815574	0.90[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs2815575	0.90[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs2815576	0.94[CHB][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs2815577	0.90[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs2999980	0.90[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs4417171	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[GIH][hapmap];0.94[JPT][hapmap];0.89[MKK][hapmap];0.92[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5024546	0.86[ASW][hapmap];0.86[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.94[JPT][hapmap];0.93[MEX][hapmap];0.83[TSI][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72799605	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72799619	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv3368825	chr10:27864181-28043820	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27999600-28002600	Weak transcription	Osteobl	bone
2	chr10:27999600-28004000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr10:28001400-28002400	Enhancers	Aorta	Aorta
4	chr10:28001400-28003800	Weak transcription	Psoas Muscle	Psoas
5	chr10:28001600-28002600	Enhancers	Fetal Muscle Leg	muscle
6	chr10:28001600-28002800	Enhancers	Stomach Smooth Muscle	stomach
7	chr10:28001800-28003800	Weak transcription	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links