Variant report

Variant	rs11015961
Chromosome Location	chr10:28001001-28001002
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:28000067..28003479-chr10:28003603..28008037,4	K562	blood:
2	chr10:28000828..28003406-chr10:28003603..28005952,2	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10826347	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs10826348	0.81[EUR][1000 genomes]
rs10829311	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs11006695	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs11006701	0.88[EUR][1000 genomes]
rs11006706	0.82[EUR][1000 genomes]
rs11015956	0.86[CEU][hapmap]
rs11015959	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11015964	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs11015965	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs11015966	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs12217587	0.93[CEU][hapmap]
rs12217663	0.86[EUR][1000 genomes]
rs12257885	0.82[EUR][1000 genomes]
rs12258832	0.91[EUR][1000 genomes]
rs16928202	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1907374	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs1907386	0.82[CEU][hapmap];0.87[JPT][hapmap]
rs1907392	0.85[JPT][hapmap]
rs2246842	0.82[CEU][hapmap]
rs2368249	0.87[EUR][1000 genomes]
rs2368250	0.87[EUR][1000 genomes]
rs2492911	0.85[JPT][hapmap]
rs2637290	0.82[CEU][hapmap]
rs2637291	0.81[CEU][hapmap]
rs2637293	0.82[CEU][hapmap];0.91[JPT][hapmap]
rs2637297	0.82[CEU][hapmap];0.87[JPT][hapmap]
rs2637314	0.80[ASN][1000 genomes]
rs2637320	0.82[CEU][hapmap]
rs2637321	0.82[CEU][hapmap]
rs2637323	0.82[CEU][hapmap]
rs2637324	0.82[CEU][hapmap]
rs2782339	0.82[CEU][hapmap]
rs2782341	0.86[CEU][hapmap]
rs2782343	0.82[CEU][hapmap]
rs2815477	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2815478	0.82[CEU][hapmap];0.90[JPT][hapmap]
rs2815479	0.82[CEU][hapmap];0.91[JPT][hapmap]
rs2815482	0.82[CEU][hapmap]
rs2815483	0.81[CEU][hapmap]
rs2815484	0.82[CEU][hapmap]
rs2815485	0.82[CEU][hapmap]
rs2815488	0.82[CEU][hapmap]
rs2815493	0.82[CEU][hapmap]
rs2815559	0.86[JPT][hapmap]
rs2815564	0.85[JPT][hapmap]
rs4417171	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs5024546	0.86[CEU][hapmap]
rs72799605	0.91[EUR][1000 genomes]
rs72799619	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv3368825	chr10:27864181-28043820	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27985800-28001400	Weak transcription	Aorta	Aorta
2	chr10:27992000-28001400	Weak transcription	Ovary	ovary
3	chr10:27992200-28001600	Weak transcription	Stomach Smooth Muscle	stomach
4	chr10:27999600-28002600	Weak transcription	Osteobl	bone
5	chr10:27999600-28004000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr10:28000800-28001600	Bivalent Enhancer	Fetal Muscle Leg	muscle
7	chr10:28001000-28001200	Enhancers	Psoas Muscle	Psoas
8	chr10:28001000-28001800	Bivalent Enhancer	Fetal Muscle Trunk	muscle

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