Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10763622	1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11006736	0.82[CHB][hapmap];0.84[YRI][hapmap];0.86[AFR][1000 genomes]
rs12355412	0.90[AFR][1000 genomes]
rs12355413	0.82[CHB][hapmap];0.84[YRI][hapmap];0.90[AFR][1000 genomes]
rs12357953	0.81[CEU][hapmap]
rs12773654	0.90[EUR][1000 genomes]
rs1334718	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1931888	1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2251454	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2782334	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2782335	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2782336	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2782343	0.82[CHB][hapmap]
rs2815497	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2815498	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2815502	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2815503	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2815504	0.87[EUR][1000 genomes]
rs2815506	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6481483	0.84[CEU][hapmap];0.86[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831813	chr10:28017606-28200651	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv971859	chr10:28070066-28271252	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28100200-28104000	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr10:28101000-28108000	Weak transcription	Ovary	ovary

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