Variant report

Variant	rs2791828
Chromosome Location	chr6:102293235-102293236
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs12333116	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12333203	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12333317	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1538792	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1543778	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs17062456	0.93[ASN][1000 genomes]
rs17062569	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2000937	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs2250050	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2251865	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2518199	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2518204	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs2791825	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2791829	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs2791830	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2791831	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2791835	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2791836	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2791846	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs34747916	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56000471	0.93[ASN][1000 genomes]
rs56230248	0.93[ASN][1000 genomes]
rs57847212	0.93[ASN][1000 genomes]
rs60199869	1.00[ASN][1000 genomes]
rs6924758	0.93[ASN][1000 genomes]
rs73512746	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73512772	1.00[ASN][1000 genomes]
rs73512776	1.00[ASN][1000 genomes]
rs73512781	1.00[ASN][1000 genomes]
rs73761411	0.93[ASN][1000 genomes]
rs73761412	0.93[ASN][1000 genomes]
rs73761417	0.93[ASN][1000 genomes]
rs7739324	0.93[ASN][1000 genomes]
rs7754697	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7760050	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7772328	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9498692	0.93[ASN][1000 genomes]
rs9498712	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9498714	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9498715	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9498719	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9498721	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9498722	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9498725	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032499	chr6:102069885-102720998	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv830743	chr6:102284082-102459192	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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