Variant report

Variant	rs28360493
Chromosome Location	chr10:6057774-6057775
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:6055685..6057860-chr10:6061812..6063688,2	MCF-7	breast:
2	chr10:6055157..6057962-chr10:6121223..6124023,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11818885	1.00[ASN][1000 genomes]
rs12243993	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12722484	1.00[ASN][1000 genomes]
rs12722486	1.00[ASN][1000 genomes]
rs12722505	1.00[ASN][1000 genomes]
rs28360488	1.00[ASN][1000 genomes]
rs3136615	1.00[ASN][1000 genomes]
rs41294605	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs41294659	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs41294663	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs41294681	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41294907	1.00[ASN][1000 genomes]
rs41294937	1.00[ASN][1000 genomes]
rs41295047	1.00[ASN][1000 genomes]
rs41295093	1.00[ASN][1000 genomes]
rs41295115	1.00[ASN][1000 genomes]
rs55998002	1.00[ASN][1000 genomes]
rs56055806	1.00[ASN][1000 genomes]
rs56121791	1.00[ASN][1000 genomes]
rs56249263	1.00[ASN][1000 genomes]
rs58820784	1.00[ASN][1000 genomes]
rs61839723	1.00[ASN][1000 genomes]
rs61839726	1.00[ASN][1000 genomes]
rs62626315	1.00[ASN][1000 genomes]
rs62626320	1.00[ASN][1000 genomes]
rs62626323	1.00[ASN][1000 genomes]
rs62626344	1.00[ASN][1000 genomes]
rs72777814	1.00[ASN][1000 genomes]
rs7893324	1.00[ASN][1000 genomes]
rs7898286	1.00[ASN][1000 genomes]
rs8177586	1.00[ASN][1000 genomes]
rs8177587	1.00[ASN][1000 genomes]
rs8177590	1.00[ASN][1000 genomes]
rs8177600	1.00[ASN][1000 genomes]
rs8177613	1.00[ASN][1000 genomes]
rs8177614	1.00[ASN][1000 genomes]
rs8177631	1.00[ASN][1000 genomes]
rs8177633	1.00[ASN][1000 genomes]
rs8177636	1.00[ASN][1000 genomes]
rs8177694	1.00[ASN][1000 genomes]
rs8177755	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6055800-6057800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr10:6055800-6057800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr10:6055800-6058000	Weak transcription	Lung	lung
4	chr10:6056000-6058000	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr10:6056200-6061000	Weak transcription	K562	blood
6	chr10:6056400-6058000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr10:6056400-6059200	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr10:6056600-6058000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr10:6056600-6059800	Weak transcription	Stomach Mucosa	stomach
10	chr10:6056800-6058000	Weak transcription	Fetal Thymus	thymus
11	chr10:6056800-6060400	Weak transcription	Primary B cells from peripheral blood	blood
12	chr10:6057000-6066000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr10:6057200-6060600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr10:6057400-6059000	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr10:6057400-6059800	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr10:6057400-6068600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr10:6057600-6057800	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr10:6057600-6059000	Strong transcription	Primary T helper cells PMA-I stimulated	--
19	chr10:6057600-6059400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr10:6057600-6060400	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr10:6057600-6062800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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