Variant report

Variant	rs8177600
Chromosome Location	chr10:6025063-6025064
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:6024087..6029669-chr10:6030328..6035984,5	K562	blood:
2	chr10:6023454..6025587-chr10:6029284..6031828,3	K562	blood:
3	chr10:6024693..6026314-chr10:6026916..6028906,2	K562	blood:
4	chr10:6023723..6026248-chr10:6032450..6034311,2	K562	blood:
5	chr10:6020440..6022335-chr10:6023498..6026826,3	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11818885	1.00[ASN][1000 genomes]
rs12243993	1.00[ASN][1000 genomes]
rs12722484	1.00[ASN][1000 genomes]
rs12722486	1.00[ASN][1000 genomes]
rs12722505	1.00[ASN][1000 genomes]
rs28360488	1.00[ASN][1000 genomes]
rs28360493	1.00[ASN][1000 genomes]
rs3136611	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3136615	1.00[ASN][1000 genomes]
rs36055263	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs41294605	1.00[ASN][1000 genomes]
rs41294659	1.00[ASN][1000 genomes]
rs41294663	1.00[ASN][1000 genomes]
rs41294681	1.00[ASN][1000 genomes]
rs41294907	1.00[ASN][1000 genomes]
rs41294937	1.00[ASN][1000 genomes]
rs41295047	1.00[ASN][1000 genomes]
rs41295093	1.00[ASN][1000 genomes]
rs41295115	1.00[ASN][1000 genomes]
rs55998002	1.00[ASN][1000 genomes]
rs56055806	1.00[ASN][1000 genomes]
rs56121791	1.00[ASN][1000 genomes]
rs56249263	1.00[ASN][1000 genomes]
rs58820784	1.00[ASN][1000 genomes]
rs61839723	1.00[ASN][1000 genomes]
rs61839726	1.00[ASN][1000 genomes]
rs62626315	1.00[ASN][1000 genomes]
rs62626320	1.00[ASN][1000 genomes]
rs62626323	1.00[ASN][1000 genomes]
rs62626344	1.00[ASN][1000 genomes]
rs7077401	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72777814	1.00[ASN][1000 genomes]
rs7893324	1.00[ASN][1000 genomes]
rs7898286	1.00[ASN][1000 genomes]
rs8177586	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8177587	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8177590	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8177613	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8177614	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8177631	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8177633	0.88[CEU][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8177636	1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8177694	1.00[ASN][1000 genomes]
rs8177755	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv1041261	chr10:5962635-6052196	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1050983	chr10:5963921-6052196	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs8177600	IL15RA	cis	multi-tissue	Pritchard
rs8177600	IL2RA	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6020400-6025800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:6020400-6029800	Weak transcription	Ovary	ovary
3	chr10:6020800-6025600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr10:6021000-6027800	Weak transcription	Adipose Nuclei	Adipose
5	chr10:6023800-6026200	Weak transcription	Pancreas	Pancrea

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